View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3237_high_106 (Length: 254)
Name: NF3237_high_106
Description: NF3237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3237_high_106 |
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Alignment Details
Target: chr6 (Bit Score: 233; Significance: 1e-129; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 28096482 - 28096718
Alignment:
| Q |
1 |
cttttgtatacaataggtttatcaatcgagttatccaccttaaatgacgtagggcaacttttgcgtaacttgcatatggaaagattctttggaagaaatt |
100 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28096482 |
cttttgtatacaataggtttatcgatcgagttatccaccttaaatgacgtagggcaacttttgcgtaacttgcatatggaaagattctttggaagaaatt |
28096581 |
T |
|
| Q |
101 |
cagatggtatatcccgtaaactatgccattccagtactcttaaattatctggaagatgtacatgaggtttgggaaagaaactagttttaacgataagtgt |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28096582 |
cagatggtatatcccgtaaactatgccattccagtactcttaaattatctggaagatgtacatgaggtttgggaaagaaactagttttaacgataagtgt |
28096681 |
T |
|
| Q |
201 |
tttaaggtttttcatcttctttaattcatctcctttc |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
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|
| T |
28096682 |
tttaaggtttttcatcttctttaattcatctcctttc |
28096718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 28 - 237
Target Start/End: Complemental strand, 28151322 - 28151107
Alignment:
| Q |
28 |
gagttatccaccttaaatgacgtagggcaacttttgcgtaacttgcatatggaaagattctttggaagaaattcagatggtatatcccgtaaacta---- |
123 |
Q |
| |
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|||||| ||| ||||||||| ||| ||| ||| || |||||||||||| ||||| ||||||||||||||| |||||| |||| || ||||| | |
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| T |
28151322 |
gagttagccaacttaaatgatgtaaggccactgtttggtaacttgcataaggaaatattctttggaagaaaatcagattgtatttcatgtaaaggaaatg |
28151223 |
T |
|
| Q |
124 |
--tgccattccagtactcttaaattatctggaagatgtacatgaggtttgggaaagaaactagttttaacgataagtgttttaaggtttttcatcttctt |
221 |
Q |
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|||||||||| |||||||||| ||| |||||||||||||||||| ||| |||||||||||||||||| | ||||||||| ||||||||||||||||| |
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| T |
28151222 |
catgccattccaatactcttaaactatttggaagatgtacatgagggttgaaaaagaaactagttttaacaacaagtgttttgaggtttttcatcttctt |
28151123 |
T |
|
| Q |
222 |
taattcatctcctttc |
237 |
Q |
| |
|
||||||||||||||| |
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|
| T |
28151122 |
gaattcatctcctttc |
28151107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 28 - 237
Target Start/End: Original strand, 26341558 - 26341773
Alignment:
| Q |
28 |
gagttatccaccttaaatgacgtagggcaacttttgcgtaacttgcatatggaaagattctttggaagaaattcagatggtatatcccgtaaacta---- |
123 |
Q |
| |
|
|||||| ||| ||||||||| ||| ||| ||| || ||||||||||||| |||||||||||||||||||| ||||||||||| ||| ||||| | |
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| T |
26341558 |
gagttagccaacttaaatgatgtaaggccactgttaggtaacttgcatattgaaagattctttggaagaaaatcagatggtatttcctgtaaaggaaatg |
26341657 |
T |
|
| Q |
124 |
--tgccattccagtactcttaaattatctggaagatgtacatgaggtttgggaaagaaactagttttaacgataagtgttttaaggtttttcatcttctt |
221 |
Q |
| |
|
|||||||| | |||||||||| ||| |||||||| |||||| | ||| |||||||||||||||||| | ||||||||| ||||||||||||||||| |
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| T |
26341658 |
catgccattctaatactcttaaactattaggaagatggacatgatggttgataaagaaactagttttaacaacaagtgttttgaggtttttcatcttctt |
26341757 |
T |
|
| Q |
222 |
taattcatctcctttc |
237 |
Q |
| |
|
||||||||||||||| |
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|
| T |
26341758 |
gaattcatctcctttc |
26341773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 119 - 237
Target Start/End: Complemental strand, 28141587 - 28141469
Alignment:
| Q |
119 |
aactatgccattccagtactcttaaattatctggaagatgtacatgaggtttgggaaagaaactagttttaacgataagtgttttaaggtttttcatctt |
218 |
Q |
| |
|
||||| |||||||||||||||||||||||| ||||||||| || || ||||| |||| || |||||| |||| ||||| ||||||| |||||| |
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| T |
28141587 |
aactacgccattccagtactcttaaattatttggaagatgctcaagacctttggaaaagcgacctcttttaataataaaagttttgaggttttccatctt |
28141488 |
T |
|
| Q |
219 |
ctttaattcatctcctttc |
237 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
28141487 |
ctttaattcatctcctttc |
28141469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 193 - 237
Target Start/End: Complemental strand, 29827896 - 29827852
Alignment:
| Q |
193 |
ataagtgttttaaggtttttcatcttctttaattcatctcctttc |
237 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
29827896 |
ataagtgttttgaggtttttcatcttcttcaattcatctcctttc |
29827852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 233
Target Start/End: Complemental strand, 28327478 - 28327432
Alignment:
| Q |
187 |
ttaacgataagtgttttaaggtttttcatcttctttaattcatctcc |
233 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||| | ||||||||| |
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|
| T |
28327478 |
ttaacaataagtgttttaaggttttgcatcttcttgagttcatctcc |
28327432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 233
Target Start/End: Complemental strand, 28505114 - 28505068
Alignment:
| Q |
187 |
ttaacgataagtgttttaaggtttttcatcttctttaattcatctcc |
233 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||| | ||||||||| |
|
|
| T |
28505114 |
ttaacaataagtgttttaaggttttgcatcttcttgagttcatctcc |
28505068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 221
Target Start/End: Complemental strand, 26939007 - 26938971
Alignment:
| Q |
185 |
ttttaacgataagtgttttaaggtttttcatcttctt |
221 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||||||| |
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| T |
26939007 |
ttttaatgataagtgttttaagatttttcatcttctt |
26938971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 28 - 237
Target Start/End: Complemental strand, 3281791 - 3281582
Alignment:
| Q |
28 |
gagttatccaccttaaatgacgtagggcaacttttgcgtaacttgcatatggaaagattctttggaagaaattcagatggtatatcccgtaaactatgcc |
127 |
Q |
| |
|
|||||| ||| ||||||||| ||| ||| ||| ||| |||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||| ||||| |
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| T |
3281791 |
gagttagccaacttaaatgatgtaaggctactgttgggtaacttgcatatggaaagattgtttggaagaaaatcagatggtatatcctttaaaccatgcc |
3281692 |
T |
|
| Q |
128 |
attccagtactcttaaattatctggaagatgtacatgaggtttgggaaagaaactagttttaacgataagtgttttaaggtttttcatcttctttaattc |
227 |
Q |
| |
|
||||||||||| ||||| ||| |||||||||||| ||||||||| |||| ||||||||||||| ||||||||||| ||||||||||||||||| ||||| |
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|
| T |
3281691 |
attccagtacttttaaactattaggaagatgtacaagaggtttggaaaaggaactagttttaacaataagtgttttgaggtttttcatcttcttgaattc |
3281592 |
T |
|
| Q |
228 |
atctcctttc |
237 |
Q |
| |
|
|||||||||| |
|
|
| T |
3281591 |
atctcctttc |
3281582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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