View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3237_high_110 (Length: 253)
Name: NF3237_high_110
Description: NF3237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3237_high_110 |
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| [»] scaffold0019 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 222; Significance: 1e-122; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 18 - 243
Target Start/End: Complemental strand, 28096441 - 28096216
Alignment:
| Q |
18 |
gcagatgttcatggttttgaaagttttacatttagacgagtgtaaacgtctaagagaaataagtgacgtatctggtctccaaaatttataagaattttca |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
28096441 |
gcagatgttcatggttttgaaagttttacatttagacgagtgtaaacgtctaagagaaataagtgacgtatctggtctccaaaatttagaagaattttca |
28096342 |
T |
|
| Q |
118 |
tttcaaaggtgtaagaaattacgtacaattcatgattctattgggttcctgaataaacttaaaatcttaaatgcggaaggttgtaggaagctcaagagtt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28096341 |
tttcaaaggtgtaagaaattacgtacaattcatgattctattgggttcctgaataaacttaaaatcttaaatgcggaaggttgtaggaagctcaagagtt |
28096242 |
T |
|
| Q |
218 |
ttccacccattcaattgacctctctg |
243 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
28096241 |
ttccacccattcaattgacctctctg |
28096216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 26341453 - 26341229
Alignment:
| Q |
18 |
gcagatgttcatggttttgaaagttttacatttagacgagtgtaaacgtctaagagaaataagtgacgtatctggtctccaaaatttataagaattttca |
117 |
Q |
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|||||||||| | | | |||||||||||| ||||||| ||| | | | ||| ||||||||| ||| ||||| |||||||||||||| ||||||||||| |
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| T |
26341453 |
gcagatgttctttggtatgaaagttttacgtttagacaagtctgcatatttaacagaaataagcgacatatctagtctccaaaatttagaagaattttca |
26341354 |
T |
|
| Q |
118 |
tttcaaaggtgtaagaaattacgtacaattcatgattctattgggttcctgaataaacttaaaatcttaaatgcggaaggttgtaggaagctcaagagtt |
217 |
Q |
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||| |||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||| || || || ||||||||||| | ||| | |||| |
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| T |
26341353 |
tttggaaggtgtaagaatgtactcgcaattcatgattctattgggttcttgaataaacttaaaattttgaacgccgaaggttgtagcaggcttagaagtt |
26341254 |
T |
|
| Q |
218 |
ttccacccattcaattgacctctct |
242 |
Q |
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||||||| ||| | ||||| ||||| |
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| T |
26341253 |
ttccaccaattaagttgacttctct |
26341229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 18 - 185
Target Start/End: Original strand, 28151425 - 28151592
Alignment:
| Q |
18 |
gcagatgttcatggttttgaaagttttacatttagacgagtgtaaacgtctaagagaaataagtgacgtatctggtctccaaaatttataagaattttca |
117 |
Q |
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|||||||||||| | | ||| ||||||| ||||||||| | |||| || ||| |||||||| |||| ||||||||||||||||||| | ||||||||| |
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| T |
28151425 |
gcagatgttcataggtatgacagttttaggtttagacgattctaaatgtttaacagaaataactgacatatctggtctccaaaatttgaaggaattttca |
28151524 |
T |
|
| Q |
118 |
tttcaaaggtgtaagaaattacgtacaattcatgattctattgggttcctgaataaacttaaaatctt |
185 |
Q |
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||| |||| ||||| || ||| ||| ||||||||||||||||||||||||||||| ||||||||||| |
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| T |
28151525 |
tttgaaagatgtaataatctacttacgattcatgattctattgggttcctgaataagcttaaaatctt |
28151592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 82 - 225
Target Start/End: Original strand, 29828234 - 29828377
Alignment:
| Q |
82 |
gacgtatctggtctccaaaatttataagaattttcatttcaaaggtgtaagaaattacgtacaattcatgattctattgggttcctgaataaacttaaaa |
181 |
Q |
| |
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||||||||||||||| |||||||| ||||||||||||| || ||| |||| ||| |||||||||||||||||||| ||||| ||||| || |||| |
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| T |
29828234 |
gacgtatctggtctcaaaaatttagtggaattttcatttcgaaaatgtgagaatttagtcacaattcatgattctattggattccttaataagctgaaaa |
29828333 |
T |
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| Q |
182 |
tcttaaatgcggaaggttgtaggaagctcaagagttttccaccc |
225 |
Q |
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| || |||| | ||||| || || || ||||||||||||||| |
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| T |
29828334 |
tattggatgcttatggttgcagcaatctaaagagttttccaccc |
29828377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 191
Target Start/End: Original strand, 27216755 - 27216805
Alignment:
| Q |
141 |
tacaattcatgattctattgggttcctgaataaacttaaaatcttaaatgc |
191 |
Q |
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||||||||||||||||||||||||||| | | ||||| ||||||| ||||| |
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| T |
27216755 |
tacaattcatgattctattgggttcctaagtcaacttcaaatcttgaatgc |
27216805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 111 - 224
Target Start/End: Original strand, 28190626 - 28190739
Alignment:
| Q |
111 |
attttcatttcaaaggtgtaagaaattacgtacaattcatgattctattgggttcctgaataaacttaaaatcttaaatgcggaaggttgtaggaagctc |
210 |
Q |
| |
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||||||||||||| ||||||||| ||| | |||||| | ||| |||||||||| ||||||||| || |||| || || |||||||| || ||||| |
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| T |
28190626 |
attttcatttcaacagtgtaagaatttaattgaaattcacaaatctgttgggttcctaaataaacttgaagtcttgaacgctgaaggttgcagcaagctt |
28190725 |
T |
|
| Q |
211 |
aagagttttccacc |
224 |
Q |
| |
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| |||||||||||| |
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| T |
28190726 |
atgagttttccacc |
28190739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 18 - 242
Target Start/End: Original strand, 3281888 - 3282112
Alignment:
| Q |
18 |
gcagatgttcatggttttgaaagttttacatttagacgagtgtaaacgtctaagagaaataagtgacgtatctggtctccaaaatttataagaattttca |
117 |
Q |
| |
|
|||||||||| ||| | |||||||||||||||||||| ||||| | | ||| |||||||||||| |||||| |||||||||||||| ||||||||||| |
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| T |
3281888 |
gcagatgttcttgggtatgaaagttttacatttagacaagtgttacaggttaacagaaataagtgatgtatctagtctccaaaatttagaagaattttca |
3281987 |
T |
|
| Q |
118 |
tttcaaaggtgtaagaaattacgtacaattcatgattctattgggttcctgaataaacttaaaatcttaaatgcggaaggttgtaggaagctcaagagtt |
217 |
Q |
| |
|
||| | |||||| ||| |||| ||||||||||||||| |||||| |||||| |||||||||||||| || || ||||||||||| || |||||||||| |
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| T |
3281988 |
tttagatggtgtaggaatttactcacaattcatgattctgttgggtgcctgaaaaaacttaaaatcttgaaagctgaaggttgtagtaatctcaagagtt |
3282087 |
T |
|
| Q |
218 |
ttccacccattcaattgacctctct |
242 |
Q |
| |
|
||||||| ||||||||||| ||||| |
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|
| T |
3282088 |
ttccaccaattcaattgacatctct |
3282112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 141 - 221
Target Start/End: Complemental strand, 17991091 - 17991011
Alignment:
| Q |
141 |
tacaattcatgattctattgggttcctgaataaacttaaaatcttaaatgcggaaggttgtaggaagctcaagagttttcc |
221 |
Q |
| |
|
||||||||| ||||| ||||||| ||| ||||||||| ||||||||||||| | |||||||| |||||| |||||||||| |
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|
| T |
17991091 |
tacaattcacgattcgattgggtacctaaataaacttgaaatcttaaatgcacagggttgtagcaagctcgagagttttcc |
17991011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 91 - 242
Target Start/End: Original strand, 26138172 - 26138323
Alignment:
| Q |
91 |
ggtctccaaaatttataagaattttcatttcaaaggtgtaagaaattacgtacaattcatgattctattgggttcctgaataaacttaaaatcttaaatg |
190 |
Q |
| |
|
||||| ||||||||| || | || |||||| ||| ||||| || ||| ||||||||| |||| ||||||||||| ||||||||| ||| |||||||| |
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| T |
26138172 |
ggtcttcaaaatttagaaaagttctcatttgaaaattgtaacaatttaattacaattcacaattcaattgggttcctaaataaacttgaaaccttaaatg |
26138271 |
T |
|
| Q |
191 |
cggaaggttgtaggaagctcaagagttttccacccattcaattgacctctct |
242 |
Q |
| |
|
| | ||||| | |||||| |||||||||||||| | || ||||||||||| |
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|
| T |
26138272 |
caaagggttgcatcaagctcgagagttttccacccttacagttgacctctct |
26138323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 221
Target Start/End: Complemental strand, 28130595 - 28130516
Alignment:
| Q |
142 |
acaattcatgattctattgggttcctgaataaacttaaaatcttaaatgcggaaggttgtaggaagctcaagagttttcc |
221 |
Q |
| |
|
|||||||| |||||||||||| ||| ||||||||| || |||||||||| | ||||| ||||||||||||| |||||| |
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|
| T |
28130595 |
acaattcacaattctattgggtacctaaataaacttgaagtcttaaatgcaaagggttgcaggaagctcaagaattttcc |
28130516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 224
Target Start/End: Complemental strand, 56141 - 56077
Alignment:
| Q |
160 |
gggttcctgaataaacttaaaatcttaaatgcggaaggttgtaggaagctcaagagttttccacc |
224 |
Q |
| |
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|||||||| ||||||||| ||||||| || ||||||||||| || ||||||| |||||| ||||| |
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|
| T |
56141 |
gggttcctaaataaacttgaaatcttgaacgcggaaggttgcagcaagctcacgagtttcccacc |
56077 |
T |
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