View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3237_high_113 (Length: 250)
Name: NF3237_high_113
Description: NF3237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3237_high_113 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 15 - 250
Target Start/End: Complemental strand, 11459043 - 11458808
Alignment:
| Q |
15 |
aagtggttggcattggcatataagttctctttgggatggggtgagggtggcgaggcatgaaagtgacgtcctatgttgttggcatgggaggaggatctgg |
114 |
Q |
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| T |
11459043 |
aagtggttggcattggcagataagttctctttgggatggggtgagggtggcgaggcatgaaagtgacatcgtatgttgttggcatgggaggaggatatgg |
11458944 |
T |
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| Q |
115 |
tagaggagtgtaatatttttcttcacaatgtgtctttgtaggtgtatattgaggatcattgacattgaaatttggatccgacatttgggtactcagtgca |
214 |
Q |
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| T |
11458943 |
tagaggagtgtaatatttttgttcacaatgtgtctttgtaggtgtatattgaggatcattgacattggaatttggatccgacatttgggtactcagtgca |
11458844 |
T |
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| Q |
215 |
ttaaacgtatcggctcctaactagtcatgaacctca |
250 |
Q |
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| T |
11458843 |
ttaagcgtatcggctccaaactagtcaggagcctca |
11458808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 15 - 250
Target Start/End: Original strand, 11527691 - 11527926
Alignment:
| Q |
15 |
aagtggttggcattggcatataagttctctttgggatggggtgagggtggcgaggcatgaaagtgacgtcctatgttgttggcatgggaggaggatctgg |
114 |
Q |
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| T |
11527691 |
aagtggttggcattagcagataagttctctttgggatggggtgagggtggcgaggcatgaaagtggcatcgtatgttgttggtatgggaggaggatctag |
11527790 |
T |
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| Q |
115 |
tagaggagtgtaatatttttcttcacaatgtgtctttgtaggtgtatattgaggatcattgacattgaaatttggatccgacatttgggtactcagtgca |
214 |
Q |
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| T |
11527791 |
tagagaagtgtaatatttttcttcacaatgtgtctttgtaggtgtatattgaggatcattgacattggaatttgaatccgacatttgggtactcagtgca |
11527890 |
T |
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| Q |
215 |
ttaaacgtatcggctcctaactagtcatgaacctca |
250 |
Q |
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| T |
11527891 |
ttaaacgtatcggcttctaactagtcaggaacctca |
11527926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 30 - 240
Target Start/End: Complemental strand, 20516269 - 20516059
Alignment:
| Q |
30 |
gcatataagttctctttgggatggggtgagggtggcgaggcatgaaagtgacgtcctatgttgttggcatgggaggaggatctggtagaggagtgtaata |
129 |
Q |
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| T |
20516269 |
gcatatatgttctctttgggatggggtgaggacggggaggcatgaaaatggcgtcgtaggttgttaacgtaggggaaggatccggtagaggagtgtagga |
20516170 |
T |
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| Q |
130 |
tttttcttcacaatgtgtctttgtaggtgtatattgaggatcattgacattgaaatttggatccgacatttgggtactcagtgcattaaacgtatcggct |
229 |
Q |
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| T |
20516169 |
ttttacttcaaaatgtgtctttacaagtggagattgaggatcattagtgttggaatttggaactgacatttgggtactcagtgcgtggagcgtatcagct |
20516070 |
T |
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| Q |
230 |
cctaactagtc |
240 |
Q |
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| T |
20516069 |
actaactagtc |
20516059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 126
Target Start/End: Original strand, 44547706 - 44547743
Alignment:
| Q |
89 |
gttgttggcatgggaggaggatctggtagaggagtgta |
126 |
Q |
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| T |
44547706 |
gttgttggcatgggaggaggagttggtagaggagtgta |
44547743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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