View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3237_high_116 (Length: 250)
Name: NF3237_high_116
Description: NF3237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3237_high_116 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 161; Significance: 6e-86; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 11 - 171
Target Start/End: Complemental strand, 2235120 - 2234960
Alignment:
| Q |
11 |
cacagaaacaccattttcccatttcatagcagaaaacgaatttaccagcaatgacctctcaagcttcaaccttcgccgtctccgtttcctccgccccttc |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2235120 |
cacagaaacaccattttcccatttcatagcagaaaacgaatttaccagcaatgacctctcaagcttcaaccttcgccgtctccgtttcctccgccccttc |
2235021 |
T |
|
| Q |
111 |
ccctctccgtcgccgtcgcaccttccccgttgttcgagctcaatgtaaagttcattccaaa |
171 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2235020 |
ccctctccgtcgccgtcgcaccttccccgttgttcgagctcaatgtaaagttcattccaaa |
2234960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University