View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3237_high_117 (Length: 249)
Name: NF3237_high_117
Description: NF3237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3237_high_117 |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-125; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 9232385 - 9232618
Alignment:
| Q |
1 |
agtagtactaatcatgtgtatgctgttttggaaccatcattgtttgagtatcgtgttgaggatattaaggttgggtgtgattttatggtggctacattgg |
100 |
Q |
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| T |
9232385 |
agtagtactaatcatgtgtattctgttttggaaccatcattgtttgagtatcgtgttgaggatattaaggttgggtgtgattttatggtggctacattgg |
9232484 |
T |
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| Q |
101 |
gtaaggcacaatcagagactgtgaaagagaatcttacttatgatgagattcatgggatgatagttgatggagttgaggtttcatggttgcctgtaatctg |
200 |
Q |
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| T |
9232485 |
gtaaggcacaatcagagactgtgaaagagaatgttacttatgatgagattcatgggatgatagttgatggagttgaggtttcatggttgcctgtaatctg |
9232584 |
T |
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| Q |
201 |
tgaagatagatgtggaaagggaacaagttgtaag |
234 |
Q |
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| T |
9232585 |
tgaagatagatgtggaaagggaacaagttgtaag |
9232618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 9386257 - 9386018
Alignment:
| Q |
1 |
agtagtactaatcatgtgtatgctgttttggaac------catcattgtttgagtatcgtgttgaggatattaaggttgggtgtgattttatggtggcta |
94 |
Q |
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| T |
9386257 |
agtagtactaatcatgtatatgcagttttggaacaatcatcatcattctccaggtatagttttggggatattaaggttgggtgtgattttatggtggcta |
9386158 |
T |
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| Q |
95 |
cattgggtaaggcacaatcagagactg---tgaaagagaatcttacttatgatgagattcatgggatgatagttgatggagttgaggtttcatggttgcc |
191 |
Q |
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| T |
9386157 |
cgttgggtaggccattgttgaagattgaagtgaaagagaagatttcttatgatgtgattcatgggatgataattgatggatttgagctttcatggttgcc |
9386058 |
T |
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| Q |
192 |
tgtaatctgtgaagatagatgtggaaagggaacaagttgt |
231 |
Q |
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| T |
9386057 |
tgtgatttgtgaagatagatgtggaaaggagacaagttgt |
9386018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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