View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3237_high_12 (Length: 570)
Name: NF3237_high_12
Description: NF3237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3237_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 476; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 19 - 560
Target Start/End: Complemental strand, 930835 - 930302
Alignment:
| Q |
19 |
caagtggctgggctaacaaatgaccaccttatcggttgcttcagattcaaggagtgtatcttctccaatgcagaagcagaaggcaaagagagcagctccc |
118 |
Q |
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| T |
930835 |
caagtggctgggctaacaaatgaccaccttatcggttgcttcagattcaaggagtgtatcttctccaatgcagaagcagaaggcaaagagagcagctccc |
930736 |
T |
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| Q |
119 |
tcaactctaaggtcaaggagaagtcaaatgaggatccaaccaatgtcggtctgttgctatctgtgaacaagttgagcttctcctcttaggaaacagattc |
218 |
Q |
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| T |
930735 |
tcaactctaaggtcaaggagaagtcaaatgaggatccaaccaatgtcggtctgttgctatctgtgaacaagttgagcttctcctcttaggaaacagattc |
930636 |
T |
|
| Q |
219 |
gctgcagtcagtggtcactatacttggttatctcaatcgttgatcaagattttatagttgagatttcgagtttctgatttgtctggtttacttccaatgt |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | | |||||| |
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| T |
930635 |
gctgcagtcagtggtcactatacttggttatctcaatcgttgatcaagattgtatagttgagatttcgagtttctgatttgtc----aaaatctcaatgt |
930540 |
T |
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| Q |
319 |
gagctgtctggtttacttccaatggtttagatctattgactacggttactgtaggaaatttcaactgtgggggatcagggtccctccacttattaccaca |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
930539 |
gagctgtctggtttacttccaatggtttagatctattgactacggttactgtaggaaatttcaactgcgggggatcagggtccctccacttattaccaca |
930440 |
T |
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| Q |
419 |
atggccttggttacattggctatgttgttattaatctggtagttgttagggaagttgggtaggttgtgtacaaaatccatacagatatatatgagtgaaa |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
930439 |
atggccttggttacattggctatgttgttattaatctggtagttgttagggaagttgggtaggttgtgtacaaaatccatacag----atatgagtgaaa |
930344 |
T |
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| Q |
519 |
tagccagaaggcagttgtatttgtataccaaattgacctttg |
560 |
Q |
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| T |
930343 |
tagccagaaggcagttgtatttgtataccaaattgagctttg |
930302 |
T |
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