View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3237_high_13 (Length: 569)
Name: NF3237_high_13
Description: NF3237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3237_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 475; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 19 - 561
Target Start/End: Original strand, 3528509 - 3529050
Alignment:
| Q |
19 |
ctatcaactaagctaaactcacagggaactttaaggagagttaatggtgttggttgcatgttagaacataaaaatagtggtccctcgtgcgccatgcaaa |
118 |
Q |
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| T |
3528509 |
ctatcaactgagctaaactcacgagga-ctttaaggagagttaatggtgttggttgcatgttagaacataaaaatagtggtccctcgtgcgccatgcaaa |
3528607 |
T |
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| Q |
119 |
cttgcatagaaagtgaccgtacaattttgatgcggcaaggggtgtcaaaggctgcatttaaattcataaatgataatttcatcttgtcaccattccaatt |
218 |
Q |
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| T |
3528608 |
cttgcatagaaagtgaccgtacaattttgatgcggcaaggggtgtcaaaggctgcatttaaattcataaatgataatttcatcttgtcaccattccaatt |
3528707 |
T |
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| Q |
219 |
tcatattggttgcaattctttagactatcttatttctcaacaaagtcatctcaataacgatacaatacactttgtatagtatgtaaactttgcaacccct |
318 |
Q |
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| T |
3528708 |
tcatattggttgcaattctttaaactatcatatttctcaacaatgtcatctcaataacgatacaatacactttgtatagtatgtaaattttgcaacccct |
3528807 |
T |
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| Q |
319 |
tgtttcacaagcaaacaaaattgttgcaataatggaaataaaggcaacttgttttcttcgaatttattttagtaggagaggagaaataatctaattggtg |
418 |
Q |
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| T |
3528808 |
tgtttaacaagcaaacaaaattgttgcaataatggaaataaatgcaacttgttttcttcgaatttattttagtaggagacgagaaataatctaattggtg |
3528907 |
T |
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| Q |
419 |
gagtatttagcaaagggaggcaaggtttgtatttttatacttgaaagctttgaagacatggcatgatctataactgagacagagatagaccactgatcac |
518 |
Q |
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| T |
3528908 |
gagtatttagcaaagagaggcaagatttgtatttttatacttgaaagctttgaagacatggcatggtctataactgagacagagatagaccactgatcac |
3529007 |
T |
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| Q |
519 |
tcaaaagaatccatttaaagtagtataataataaaaataatac |
561 |
Q |
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| T |
3529008 |
tcaaaagaatccatttaaaatattataataataaaaataatac |
3529050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 179 - 373
Target Start/End: Complemental strand, 1797388 - 1797194
Alignment:
| Q |
179 |
aattcataaatgataatttcatcttgtcaccattccaa-tttcatattggttgcaattctttagactatcttatttctcaacaaagtcatctcaataacg |
277 |
Q |
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| T |
1797388 |
aattcataaatgttaatttcatcttgttaccactccaaatttcat--tggttgtaattctttacactatcagatttctctacaatgttaactcaatcaca |
1797291 |
T |
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| Q |
278 |
atacaatacactttgtatag--tatgtaaactttgcaaccccttgtttcacaagcaaacaaaattgttgcaataatggaaataaaggcaacttgtttt |
373 |
Q |
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| T |
1797290 |
atacaatacattttgtatataatatgtaaa-tttgtagcccctttttccatcaactaacaaaattgttgtaacaatgaaaataaatgcaacttttttt |
1797194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 450 - 496
Target Start/End: Complemental strand, 1797086 - 1797040
Alignment:
| Q |
450 |
tttttatacttgaaagctttgaagacatggcatgatctataactgag |
496 |
Q |
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| T |
1797086 |
tttttatacttgaaagtcttgaagacatggcatggtctataactgag |
1797040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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