View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3237_high_130 (Length: 238)
Name: NF3237_high_130
Description: NF3237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3237_high_130 |
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Alignment Details
Target: chr6 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 80 - 214
Target Start/End: Original strand, 1717989 - 1718123
Alignment:
| Q |
80 |
cagacagcggcgaacaagcaatccaacggaatcacacaccaaaatccacaacagtaacttaatccaccttgtttcaagcaaacagcttcaatccaaagga |
179 |
Q |
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| T |
1717989 |
cagagagcggcgaacaagcaatccaacggaatcacgcaccaaaatccacaacagtaacttaatccaccttgttccaagcaaacaacttcaacccaaagga |
1718088 |
T |
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| Q |
180 |
gcaaagacataggaggattaaacaaagctcaccac |
214 |
Q |
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| T |
1718089 |
gcaaagacagaggaggattaaacaaagctcaccac |
1718123 |
T |
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Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 108 - 207
Target Start/End: Complemental strand, 25221421 - 25221322
Alignment:
| Q |
108 |
gaatcacacaccaaaatccacaacagtaacttaatccaccttgtttcaagcaaacagcttcaatccaaaggagcaaagacataggaggattaaacaaagc |
207 |
Q |
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||||| |||||||||||||||||||||||| | | ||||||| ||||||||||||| | |||||||||| | | |||| ||||||| |||||||||| |
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| T |
25221421 |
gaatctcacaccaaaatccacaacagtaaccgagactgccttgttccaagcaaacagctacgatccaaaggaacgatgacagaggaggactaaacaaagc |
25221322 |
T |
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