View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3237_high_131 (Length: 237)

Name: NF3237_high_131
Description: NF3237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3237_high_131
NF3237_high_131
[»] chr6 (5 HSPs)
chr6 (1-220)||(2234595-2234814)
chr6 (100-164)||(27881354-27881421)
chr6 (142-198)||(7953086-7953142)
chr6 (142-185)||(3525041-3525084)
chr6 (167-200)||(434188-434221)
[»] chr5 (8 HSPs)
chr5 (96-218)||(117383-117500)
chr5 (142-198)||(35138949-35139005)
chr5 (142-200)||(14299427-14299485)
chr5 (97-144)||(32150630-32150677)
chr5 (91-144)||(2864688-2864741)
chr5 (139-200)||(38587187-38587248)
chr5 (101-133)||(10957175-10957207)
chr5 (119-147)||(33059562-33059590)
[»] chr8 (8 HSPs)
chr8 (99-193)||(32994128-32994217)
chr8 (96-200)||(10368066-10368165)
chr8 (170-200)||(16972018-16972048)
chr8 (143-210)||(32927981-32928050)
chr8 (142-191)||(26100072-26100121)
chr8 (96-144)||(7602013-7602061)
chr8 (96-144)||(25693712-25693760)
chr8 (92-132)||(35495363-35495403)
[»] chr7 (6 HSPs)
chr7 (100-198)||(40491681-40491774)
chr7 (96-194)||(597827-597921)
chr7 (93-198)||(42481772-42481872)
chr7 (158-218)||(27571943-27572005)
chr7 (158-210)||(45557454-45557508)
chr7 (158-198)||(12306826-12306866)
[»] chr2 (4 HSPs)
chr2 (95-191)||(36307075-36307166)
chr2 (92-200)||(11759740-11759843)
chr2 (102-194)||(42774743-42774835)
chr2 (97-179)||(37745784-37745861)
[»] chr3 (7 HSPs)
chr3 (93-134)||(31708136-31708177)
chr3 (146-198)||(24916587-24916639)
chr3 (91-142)||(36364992-36365043)
chr3 (142-200)||(1441333-1441391)
chr3 (142-191)||(44958568-44958617)
chr3 (96-144)||(31013170-31013218)
chr3 (142-198)||(37334960-37335016)
[»] chr1 (8 HSPs)
chr1 (104-144)||(39289188-39289228)
chr1 (92-144)||(40662886-40662938)
chr1 (98-210)||(3515896-3516005)
chr1 (168-198)||(35961471-35961501)
chr1 (98-200)||(47899354-47899451)
chr1 (94-135)||(16556623-16556664)
chr1 (92-133)||(29988468-29988509)
chr1 (142-198)||(11817243-11817299)
[»] chr4 (2 HSPs)
chr4 (94-135)||(53158831-53158872)
chr4 (92-144)||(17897789-17897841)


Alignment Details
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 2234814 - 2234595
Alignment:
Q  1 caatggtaggtggttattcattgtgttatccagaagatgtttgtggaaatgcttctgaactgagttttgaaattttgtgttttcatcatgaatttagtgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2234814 caatggtaggtggttattcattgtgttatccagaagatgtttgtggaaatgcttctgaactgagttttgaaattttgtgttttcatcatgaatttagtgt 2234715  T
Q  101 atgtttggttctgctttgataaaaattgattttgagtcaattgaattgattatgcaaaattgatgctggctaaaagtgagttgaaggtaaaatgatttgt 200  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||     
T  2234714 atgtttggttctgctttgataaaaattgcttttgagtcaattgaattgattatgcaaaattgatgctggctaaaagtgagatgaaggtaaaatgatttgc 2234615  T
Q  201 ttggatacatgtatgtaata 220  Q
    |||||||||| |||||||||    
T  2234614 ttggatacatttatgtaata 2234595  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 100 - 164
Target Start/End: Original strand, 27881354 - 27881421
Alignment:
Q  100 tatgtttggttctgctttgataaaaattgattttgagtcaat---tgaattgattatgcaaaattgat 164  Q
    ||||||||||||||||||||||| |||||||| ||||| |||   ||||||||||||| |||||||||    
T  27881354 tatgtttggttctgctttgataagaattgattctgagtgaattggtgaattgattatgtaaaattgat 27881421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 142 - 198
Target Start/End: Complemental strand, 7953142 - 7953086
Alignment:
Q  142 tgaattgattatgcaaaattgatgctggctaaaagtgagttgaaggtaaaatgattt 198  Q
    ||||||||||||| ||||||||| ||||| |||| ||||||||||||||| ||||||    
T  7953142 tgaattgattatgaaaaattgattctggccaaaattgagttgaaggtaaagtgattt 7953086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 185
Target Start/End: Complemental strand, 3525084 - 3525041
Alignment:
Q  142 tgaattgattatgcaaaattgatgctggctaaaagtgagttgaa 185  Q
    ||||||||||||| |||||||||  |||||||||||||||||||    
T  3525084 tgaattgattatgtaaaattgattgtggctaaaagtgagttgaa 3525041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 200
Target Start/End: Original strand, 434188 - 434221
Alignment:
Q  167 tggctaaaagtgagttgaaggtaaaatgatttgt 200  Q
    ||||||||||||||||| ||||||||||||||||    
T  434188 tggctaaaagtgagttgcaggtaaaatgatttgt 434221  T

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Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 96 - 218
Target Start/End: Original strand, 117383 - 117500
Alignment:
Q  96 agtgtatgtttggttctgctttgataaaaattgattttgagtcaattgaattgattatgcaaaattgatgctggctaaaagtgagttgaaggtaaaatga 195  Q
    ||||||||||||||||||  |||| |||||||||||  ||||     |||||||||||| || |||||| ||| ||| ||||||||||||||||||||||    
T  117383 agtgtatgtttggttctgtgttgacaaaaattgatt--gagt-----gaattgattatgtaatattgattctgactagaagtgagttgaaggtaaaatga 117475  T
Q  196 tt--tgtttggatacatgtatgtaa 218  Q
    ||  ||||||||||||| |||||||    
T  117476 ttcatgtttggatacatctatgtaa 117500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 142 - 198
Target Start/End: Original strand, 35138949 - 35139005
Alignment:
Q  142 tgaattgattatgcaaaattgatgctggctaaaagtgagttgaaggtaaaatgattt 198  Q
    ||||||||||||| ||| ||||| ||| |||||| ||||||||||||||||||||||    
T  35138949 tgaattgattatgtaaacttgattctgtctaaaattgagttgaaggtaaaatgattt 35139005  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 142 - 200
Target Start/End: Complemental strand, 14299485 - 14299427
Alignment:
Q  142 tgaattgattatgcaaaattgatgctggctaaaagtgagttgaaggtaaaatgatttgt 200  Q
    |||||||||| || ||||||||| || | ||||||||||||||||||||| ||||||||    
T  14299485 tgaattgattgtgtaaaattgattctagataaaagtgagttgaaggtaaagtgatttgt 14299427  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 97 - 144
Target Start/End: Complemental strand, 32150677 - 32150630
Alignment:
Q  97 gtgtatgtttggttctgctttgataaaaattgattttgagtcaattga 144  Q
    |||||||| ||||||| || ||||||||||||||||||||| ||||||    
T  32150677 gtgtatgtctggttctcctatgataaaaattgattttgagtaaattga 32150630  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 144
Target Start/End: Complemental strand, 2864741 - 2864688
Alignment:
Q  91 aatttagtgtatgtttggttctgctttgataaaaattgattttgagtcaattga 144  Q
    |||||||||| |||| |||| |||||||| || |||||||||||||| ||||||    
T  2864741 aatttagtgtttgttgggttatgctttgacaataattgattttgagttaattga 2864688  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 200
Target Start/End: Complemental strand, 38587248 - 38587187
Alignment:
Q  139 aattgaattgattatgcaaaattgatgctggctaaaagtgagttgaaggtaaaatgatttgt 200  Q
    |||||||||||||||  |||| |||| | | |||||||| ||||||||||||||| ||||||    
T  38587248 aattgaattgattatataaaagtgattccgactaaaagtaagttgaaggtaaaataatttgt 38587187  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 133
Target Start/End: Original strand, 10957175 - 10957207
Alignment:
Q  101 atgtttggttctgctttgataaaaattgatttt 133  Q
    ||||||||||||||| |||||||||||||||||    
T  10957175 atgtttggttctgctgtgataaaaattgatttt 10957207  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 147
Target Start/End: Original strand, 33059562 - 33059590
Alignment:
Q  119 ataaaaattgattttgagtcaattgaatt 147  Q
    |||||||||||||||||||||||||||||    
T  33059562 ataaaaattgattttgagtcaattgaatt 33059590  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 99 - 193
Target Start/End: Original strand, 32994128 - 32994217
Alignment:
Q  99 gtatgtttggttctgctttgataaaaattgattttgagtcaattgaattgattatgcaaaattgatgctggctaaaagtgagttgaaggtaaaat 193  Q
    ||||||||||||||||  |||| | |||||||||||| |     ||| |||||||| ||||||||| |||||| |||||||||||||||||||||    
T  32994128 gtatgtttggttctgcagtgatgacaattgattttgaat-----gaactgattatgtaaaattgattctggctgaaagtgagttgaaggtaaaat 32994217  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 200
Target Start/End: Complemental strand, 10368165 - 10368066
Alignment:
Q  96 agtgtatgtttggttctgctttgataaaaattgattttgagtcaattgaattgattatgcaaaattgatgctggctaaaagtgagttgaaggtaaaatga 195  Q
    |||||||||||||||  ||  |||||| ||||||||||||||     |||||| || || |||||||||  ||  ||||||||||||||||||||| |||    
T  10368165 agtgtatgtttggtttcgcagtgataagaattgattttgagt-----gaattgtttttgtaaaattgattttgagtaaaagtgagttgaaggtaaagtga 10368071  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 200
Target Start/End: Original strand, 16972018 - 16972048
Alignment:
Q  170 ctaaaagtgagttgaaggtaaaatgatttgt 200  Q
    |||||||||||||||||||||||||||||||    
T  16972018 ctaaaagtgagttgaaggtaaaatgatttgt 16972048  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 210
Target Start/End: Complemental strand, 32928050 - 32927981
Alignment:
Q  143 gaattgattatgcaaaattgatgctggctaaaagtgagttgaaggtaaaatgatt--tgtttggatacat 210  Q
    |||||||||||| ||||||||| ||  |||||| ||||||||||| ||| |||||  |||||||||||||    
T  32928050 gaattgattatgtaaaattgattcttactaaaattgagttgaaggcaaagtgatttgtgtttggatacat 32927981  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 191
Target Start/End: Original strand, 26100072 - 26100121
Alignment:
Q  142 tgaattgattatgcaaaattgatgctggctaaaagtgagttgaaggtaaa 191  Q
    ||||||||||||| ||||||||| ||| ||||||  ||||||||||||||    
T  26100072 tgaattgattatgtaaaattgattctgactaaaaacgagttgaaggtaaa 26100121  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 144
Target Start/End: Original strand, 7602013 - 7602061
Alignment:
Q  96 agtgtatgtttggttctgctttgataaaaattgattttgagtcaattga 144  Q
    |||||||||||||||| || |||||||  ||||||||||||| ||||||    
T  7602013 agtgtatgtttggttccgcattgataattattgattttgagtgaattga 7602061  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 144
Target Start/End: Original strand, 25693712 - 25693760
Alignment:
Q  96 agtgtatgtttggttctgctttgataaaaattgattttgagtcaattga 144  Q
    |||||| ||||||||||  ||||| ||||||||||||||||| ||||||    
T  25693712 agtgtacgtttggttctattttgacaaaaattgattttgagtgaattga 25693760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 132
Target Start/End: Complemental strand, 35495403 - 35495363
Alignment:
Q  92 atttagtgtatgtttggttctgctttgataaaaattgattt 132  Q
    |||||||||||||||||||||||| |||  |||||||||||    
T  35495403 atttagtgtatgtttggttctgctgtgacgaaaattgattt 35495363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 100 - 198
Target Start/End: Complemental strand, 40491774 - 40491681
Alignment:
Q  100 tatgtttggttctgctttgataaaaattgattttgagtcaattgaattgattatgcaaaattgatgctggctaaaagtgagttgaaggtaaaatgattt 198  Q
    |||||||||||||||  ||| || ||||||||||||||     ||||||||| || |||||||||  || |||||||||||||||||||||| ||||||    
T  40491774 tatgtttggttctgcggtgacaagaattgattttgagt-----gaattgattctgtaaaattgattttgactaaaagtgagttgaaggtaaagtgattt 40491681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 96 - 194
Target Start/End: Original strand, 597827 - 597921
Alignment:
Q  96 agtgtatgtttggttctgctttgataaaaattgattttgagtcaattgaattgattatgcaaaattgatgctggctaaaagtgagttgaaggtaaaatg 194  Q
    |||||||||||||||||||  |||||||| ||||||||      | |||||||| |||| |||||||||  ||||||||| ||||||||||||||||||    
T  597827 agtgtatgtttggttctgcggtgataaaatttgatttttt----agtgaattgagtatgtaaaattgattttggctaaaactgagttgaaggtaaaatg 597921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 198
Target Start/End: Original strand, 42481772 - 42481872
Alignment:
Q  93 tttagtgtatgtttggttctgctttgataaaaattgattttgagtcaattgaattgattatgcaaaattgatgctggctaaaagtgagttgaaggtaaaa 192  Q
    ||||||||||||||| | ||||  ||| || ||||||||||     || ||||||||||||| ||||||||| |||   |||||||||||||| ||||||    
T  42481772 tttagtgtatgtttgctcctgcggtgaaaagaattgatttt-----aagtgaattgattatgtaaaattgattctgaaaaaaagtgagttgaatgtaaaa 42481866  T
Q  193 tgattt 198  Q
    ||||||    
T  42481867 tgattt 42481872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 218
Target Start/End: Complemental strand, 27572005 - 27571943
Alignment:
Q  158 aattgatgctggctaaaagtgagttgaaggtaaaatgatt--tgtttggatacatgtatgtaa 218  Q
    |||||||  |||||||||||||||| ||||||||||||||  || |||||||||| |||||||    
T  27572005 aattgattatggctaaaagtgagttaaaggtaaaatgatttatggttggatacatttatgtaa 27571943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 210
Target Start/End: Complemental strand, 45557508 - 45557454
Alignment:
Q  158 aattgatgctggctaaaagtgagttgaaggtaaaatgatt--tgtttggatacat 210  Q
    ||||||| ||| |||||||||||||||||||||| |||||  |||||||||||||    
T  45557508 aattgattctgactaaaagtgagttgaaggtaaagtgatttgtgtttggatacat 45557454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 198
Target Start/End: Complemental strand, 12306866 - 12306826
Alignment:
Q  158 aattgatgctggctaaaagtgagttgaaggtaaaatgattt 198  Q
    ||||||| ||||||||||||||||||||| |||| ||||||    
T  12306866 aattgattctggctaaaagtgagttgaagataaagtgattt 12306826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 95 - 191
Target Start/End: Complemental strand, 36307166 - 36307075
Alignment:
Q  95 tagtgtatgtttggttctgctttgataaaaattgattttgagtcaattgaattgattatgcaaaattgatgctggctaaaagtgagttgaaggtaaa 191  Q
    |||||||||||| |||| ||||| | |||||||||| ||||||     |||||||||||| |||||||||  ||| ||||||||||||||| |||||    
T  36307166 tagtgtatgtttagttcagcttttacaaaaattgatcttgagt-----gaattgattatgtaaaattgattatggataaaagtgagttgaacgtaaa 36307075  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 200
Target Start/End: Original strand, 11759740 - 11759843
Alignment:
Q  92 atttagtgtatgtttggttctgctttgataaaaattgattttgagtcaattgaattgattatgcaaaattgatgctggctaaaagtgagttgaaggtaaa 191  Q
    ||||||||||||||||||| ||   ||| ||||||||| |||||||     ||||||||| || |||||||||  ||  |||||||||||||||||||||    
T  11759740 atttagtgtatgtttggttatgaggtgaaaaaaattgagtttgagt-----gaattgattttgtaaaattgattttgattaaaagtgagttgaaggtaaa 11759834  T
Q  192 atgatttgt 200  Q
     || |||||    
T  11759835 ttggtttgt 11759843  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 194
Target Start/End: Original strand, 42774743 - 42774835
Alignment:
Q  102 tgtttggttctgctttgataaaaattgattttgagtcaattgaattgattatgcaaaattgatgctggctaaaagtgagttgaaggtaaaatg 194  Q
    ||||||| |||||  ||| ||| ||||||||||| |  | |||||||||| || ||||||||| ||| |||||| | ||||||||||||||||    
T  42774743 tgtttggctctgcggtgacaaagattgattttgatttgaatgaattgattttgtaaaattgattctgactaaaaataagttgaaggtaaaatg 42774835  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 179
Target Start/End: Original strand, 37745784 - 37745861
Alignment:
Q  97 gtgtatgtttggttctgctttgataaaaattgattttgagtcaattgaattgattatgcaaaattgatgctggctaaaagtga 179  Q
    |||||||||||||| |||  |||||| |||||||||||||     ||||||||||||| |||||||||  || ||||||||||    
T  37745784 gtgtatgtttggttttgcggtgataataattgattttgag-----tgaattgattatgtaaaattgattttgtctaaaagtga 37745861  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 134
Target Start/End: Original strand, 31708136 - 31708177
Alignment:
Q  93 tttagtgtatgtttggttctgctttgataaaaattgattttg 134  Q
    ||||||||||||||||||||||||||| || |||||||||||    
T  31708136 tttagtgtatgtttggttctgctttgacaagaattgattttg 31708177  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 198
Target Start/End: Complemental strand, 24916639 - 24916587
Alignment:
Q  146 ttgattatgcaaaattgatgctggctaaaagtgagttgaaggtaaaatgattt 198  Q
    |||||| || ||||||||| | |||||||||||||||||| ||||||||||||    
T  24916639 ttgattttgtaaaattgattcaggctaaaagtgagttgaatgtaaaatgattt 24916587  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 142
Target Start/End: Complemental strand, 36365043 - 36364992
Alignment:
Q  91 aatttagtgtatgtttggttctgctttgataaaaattgattttgagtcaatt 142  Q
    ||||||||||||||||||||| ||||| | || |||||||||||||| ||||    
T  36365043 aatttagtgtatgtttggttcagcttttacaataattgattttgagtaaatt 36364992  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 200
Target Start/End: Original strand, 1441333 - 1441391
Alignment:
Q  142 tgaattgattatgcaaaattgatgctggctaaaagtgagttgaaggtaaaatgatttgt 200  Q
    |||||| ||| || ||||||||| ||| |||||||||||||||| ||||| ||||||||    
T  1441333 tgaattaattttgtaaaattgattctgtctaaaagtgagttgaacgtaaagtgatttgt 1441391  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 191
Target Start/End: Original strand, 44958568 - 44958617
Alignment:
Q  142 tgaattgattatgcaaaattgatgctggctaaaagtgagttgaaggtaaa 191  Q
    ||||||||| ||| |||||||||  ||||||||||||||||||| |||||    
T  44958568 tgaattgatcatgtaaaattgattttggctaaaagtgagttgaaagtaaa 44958617  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 144
Target Start/End: Complemental strand, 31013218 - 31013170
Alignment:
Q  96 agtgtatgtttggttctgctttgataaaaattgattttgagtcaattga 144  Q
    ||||||| |||||||||||||||  || |||||||||||||| ||||||    
T  31013218 agtgtatatttggttctgctttggcaagaattgattttgagtgaattga 31013170  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 198
Target Start/End: Original strand, 37334960 - 37335016
Alignment:
Q  142 tgaattgattatgcaaaattgatgctggctaaaagtgagttgaaggtaaaatgattt 198  Q
    ||||||||||||  ||||||||| | | |||||| ||||||||||||||| ||||||    
T  37334960 tgaattgattatataaaattgattccgactaaaattgagttgaaggtaaagtgattt 37335016  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 144
Target Start/End: Original strand, 39289188 - 39289228
Alignment:
Q  104 tttggttctgctttgataaaaattgattttgagtcaattga 144  Q
    |||||||||||| ||||||||||||||||||| ||||||||    
T  39289188 tttggttctgctgtgataaaaattgattttgaatcaattga 39289228  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 144
Target Start/End: Original strand, 40662886 - 40662938
Alignment:
Q  92 atttagtgtatgtttggttctgctttgataaaaattgattttgagtcaattga 144  Q
    |||||||||||||||||||||| ||||| || |||| ||||||||| ||||||    
T  40662886 atttagtgtatgtttggttctgttttgacaagaattaattttgagtgaattga 40662938  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 210
Target Start/End: Complemental strand, 3516005 - 3515896
Alignment:
Q  98 tgtatgtttggttctgctttgataaaaattgattttgagtcaattgaattgattatgcaaaattgatgctggctaaaagtgagttgaaggtaaaatgatt 197  Q
    ||||||||||||| |||  |||| | ||||| |||||||     ||||||||||||| ||||||||| ||||  |||| |||||||||||| || |||||    
T  3516005 tgtatgtttggttatgcggtgattagaattggttttgag-----tgaattgattatgtaaaattgattctggtgaaaattgagttgaaggtgaagtgatt 3515911  T
Q  198 --tgtttggatacat 210  Q
      |||||||||||||    
T  3515910 tgtgtttggatacat 3515896  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 198
Target Start/End: Complemental strand, 35961501 - 35961471
Alignment:
Q  168 ggctaaaagtgagttgaaggtaaaatgattt 198  Q
    |||||||||||||||||||||||||||||||    
T  35961501 ggctaaaagtgagttgaaggtaaaatgattt 35961471  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 200
Target Start/End: Complemental strand, 47899451 - 47899354
Alignment:
Q  98 tgtatgtttggttctgctttgataaaaattgattttgagtcaattgaattgattatgcaaaattgatgctggctaaaagtgagttgaaggtaaaatgatt 197  Q
    ||||||||| ||| | |||||| || ||||||||||||||     ||||||||| || ||||||||| ||  |||||||||||||| || |||||| |||    
T  47899451 tgtatgttttgttatactttgacaagaattgattttgagt-----gaattgattttgtaaaattgattcttactaaaagtgagttgcagataaaataatt 47899357  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 135
Target Start/End: Complemental strand, 16556664 - 16556623
Alignment:
Q  94 ttagtgtatgtttggttctgctttgataaaaattgattttga 135  Q
    ||||||||||||||||||| ||| || |||||||||||||||    
T  16556664 ttagtgtatgtttggttctacttcgacaaaaattgattttga 16556623  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 133
Target Start/End: Complemental strand, 29988509 - 29988468
Alignment:
Q  92 atttagtgtatgtttggttctgctttgataaaaattgatttt 133  Q
    ||||||||||||||||||| |||  |||||||||||||||||    
T  29988509 atttagtgtatgtttggttatgcgatgataaaaattgatttt 29988468  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 198
Target Start/End: Original strand, 11817243 - 11817299
Alignment:
Q  142 tgaattgattatgcaaaattgatgctggctaaaagtgagttgaaggtaaaatgattt 198  Q
    |||||||||| || ||||||||| ||  ||||||| ||||||||| |||||||||||    
T  11817243 tgaattgattttgtaaaattgattctaactaaaagcgagttgaagataaaatgattt 11817299  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 135
Target Start/End: Original strand, 53158831 - 53158872
Alignment:
Q  94 ttagtgtatgtttggttctgctttgataaaaattgattttga 135  Q
    ||||||| |||||||||||||| ||| |||||||||||||||    
T  53158831 ttagtgtgtgtttggttctgctgtgacaaaaattgattttga 53158872  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 144
Target Start/End: Original strand, 17897789 - 17897841
Alignment:
Q  92 atttagtgtatgtttggttctgctttgataaaaattgattttgagtcaattga 144  Q
    ||||| ||| |||||||||||||  ||| ||||||||||||||||| ||||||    
T  17897789 atttaatgtttgtttggttctgcggtgacaaaaattgattttgagtgaattga 17897841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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