View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3237_high_134 (Length: 236)
Name: NF3237_high_134
Description: NF3237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3237_high_134 |
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Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 13 - 220
Target Start/End: Complemental strand, 37035775 - 37035568
Alignment:
| Q |
13 |
gagaagaagccaaagtatgaacacaattacaaagcaggagctatgaatgcgttggtaatttttctgactaaaatttagtgttctgataatctaatgctta |
112 |
Q |
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| T |
37035775 |
gagaagaggccaaagtatgaacacaattacaaagcaggagctatgaatgtgttggtaatttttctgactaaaatttagtgttctgataatctaatgctta |
37035676 |
T |
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| Q |
113 |
gttttttgggaaccattcttatctttcttaattgaaatttgcagacaagagtttcaggattgatgaccaatgcgccttttatgttgaacgtggactgtga |
212 |
Q |
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| T |
37035675 |
gttttttgggaaccattcttatctttcttaattgaaatttgcagacaagagtttcaggattgatgaccaatgcgccttttatgttgaacgtggactgtga |
37035576 |
T |
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| Q |
213 |
catggttg |
220 |
Q |
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|||||||| |
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| T |
37035575 |
catggttg |
37035568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 13 - 220
Target Start/End: Complemental strand, 37045033 - 37044826
Alignment:
| Q |
13 |
gagaagaagccaaagtatgaacacaattacaaagcaggagctatgaatgcgttggtaatttttctgactaaaatttagtgttctgataatctaatgctta |
112 |
Q |
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||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||| || ||||||| | || | ||||| |||| |
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| T |
37045033 |
gagaagagaccaaagtatgaacacaattacaaagcgggagctatgaatgtgttggtaatttcgctgaccaatatttagttctgcgaaatactaattctta |
37044934 |
T |
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| Q |
113 |
gttttttgggaaccattcttatctttcttaattgaaatttgcagacaagagtttcaggattgatgaccaatgcgccttttatgttgaacgtggactgtga |
212 |
Q |
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| T |
37044933 |
tgtttcagagactcattcttgtctttcttaattggaatttgcagacaagagtctctggattgatgaccaatgctccttttatgttgaacgtagactgtga |
37044834 |
T |
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| Q |
213 |
catggttg |
220 |
Q |
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| T |
37044833 |
catggttg |
37044826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 216
Target Start/End: Original strand, 17657647 - 17657709
Alignment:
| Q |
154 |
cagacaagagtttcaggattgatgaccaatgcgccttttatgttgaacgtggactgtgacatg |
216 |
Q |
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| T |
17657647 |
cagacaagagtctctgggttgattaccaatgcacccttcatgttgaacgtggattgtgacatg |
17657709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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