View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3237_high_14 (Length: 568)

Name: NF3237_high_14
Description: NF3237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3237_high_14
NF3237_high_14
[»] scaffold0268 (1 HSPs)
scaffold0268 (420-560)||(18950-19090)
[»] chr8 (5 HSPs)
chr8 (420-560)||(9866132-9866272)
chr8 (420-488)||(130109-130177)
chr8 (415-466)||(32057260-32057311)
chr8 (437-466)||(9875166-9875195)
chr8 (419-460)||(9875372-9875413)
[»] scaffold0031 (1 HSPs)
scaffold0031 (426-560)||(91205-91339)
[»] chr6 (5 HSPs)
chr6 (426-558)||(24016697-24016829)
chr6 (420-560)||(2196936-2197076)
chr6 (426-560)||(629814-629949)
chr6 (426-466)||(31098706-31098746)
chr6 (419-466)||(1569577-1569624)
[»] chr5 (2 HSPs)
chr5 (420-560)||(22292705-22292845)
chr5 (420-485)||(13579015-13579080)
[»] chr1 (9 HSPs)
chr1 (244-320)||(5242404-5242480)
chr1 (106-184)||(5242266-5242344)
chr1 (359-419)||(5242502-5242562)
chr1 (497-560)||(27052624-27052688)
chr1 (409-466)||(51311643-51311700)
chr1 (20-52)||(5234429-5234461)
chr1 (420-466)||(38634964-38635010)
chr1 (417-466)||(48734907-48734956)
chr1 (426-466)||(8674693-8674733)
[»] scaffold1603 (1 HSPs)
scaffold1603 (426-560)||(192-326)
[»] chr7 (7 HSPs)
chr7 (420-560)||(13926055-13926195)
chr7 (420-466)||(19794397-19794443)
chr7 (497-560)||(38656968-38657032)
chr7 (419-466)||(15746687-15746734)
chr7 (420-466)||(13931851-13931897)
chr7 (497-560)||(8943032-8943096)
chr7 (418-466)||(21460128-21460176)
[»] chr2 (4 HSPs)
chr2 (497-560)||(29075916-29075980)
chr2 (420-466)||(12524142-12524188)
chr2 (497-553)||(15573347-15573404)
chr2 (417-466)||(33473862-33473911)
[»] chr3 (5 HSPs)
chr3 (418-469)||(31893454-31893505)
chr3 (424-466)||(44308428-44308470)
chr3 (497-560)||(11758943-11759007)
chr3 (420-460)||(34134118-34134158)
chr3 (497-560)||(52616421-52616485)
[»] chr4 (2 HSPs)
chr4 (507-560)||(13736611-13736665)
chr4 (420-460)||(28804180-28804220)
[»] scaffold0604 (1 HSPs)
scaffold0604 (421-466)||(7217-7262)


Alignment Details
Target: scaffold0268 (Bit Score: 129; Significance: 2e-66; HSPs: 1)
Name: scaffold0268
Description:

Target: scaffold0268; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 420 - 560
Target Start/End: Complemental strand, 19090 - 18950
Alignment:
Q  420 ggtggtatttagcatgcacaaatgatagatttgtgcaccatgcacaattttcccatggaaggacagctgtaggtaaattacctgctagaatattttaatg 519  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  19090 ggtggcatttagcatgcacaaatgatagatttgtgcaccatgcacaattttcccatggaaggacagctggaggtaaattacctgctagaatattttaatg 18991  T
Q  520 tttcatattatattgtaaaatattcatttattgtctctgct 560  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  18990 tttcatattatattgtaaaatattcatttattgtttctgct 18950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 125; Significance: 4e-64; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 420 - 560
Target Start/End: Original strand, 9866132 - 9866272
Alignment:
Q  420 ggtggtatttagcatgcacaaatgatagatttgtgcaccatgcacaattttcccatggaaggacagctgtaggtaaattacctgctagaatattttaatg 519  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||    
T  9866132 ggtggcatttagcatgcacaaatgatagatttgtgcaccatgcacaatttttccatggaaggacagctgtaggtaaatgacctgctagaatattttaatg 9866231  T
Q  520 tttcatattatattgtaaaatattcatttattgtctctgct 560  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  9866232 tttcatattatattgtaaaatattcatttattgtttctgct 9866272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 420 - 488
Target Start/End: Complemental strand, 130177 - 130109
Alignment:
Q  420 ggtggtatttagcatgcacaaatgatagatttgtgcaccatgcacaattttcccatggaaggacagctg 488  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  130177 ggtggcatttagcatgcacaaatgatagatttgtgcaccatgcacaattttcccatggaaggatagctg 130109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 415 - 466
Target Start/End: Original strand, 32057260 - 32057311
Alignment:
Q  415 tatacggtggtatttagcatgcacaaatgatagatttgtgcaccatgcacaa 466  Q
    |||| ||||| |||||||||||||||  || |||||||||||||||||||||    
T  32057260 tatagggtggcatttagcatgcacaagggaaagatttgtgcaccatgcacaa 32057311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 437 - 466
Target Start/End: Complemental strand, 9875195 - 9875166
Alignment:
Q  437 acaaatgatagatttgtgcaccatgcacaa 466  Q
    ||||||||||||||||||||||||||||||    
T  9875195 acaaatgatagatttgtgcaccatgcacaa 9875166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 460
Target Start/End: Complemental strand, 9875413 - 9875372
Alignment:
Q  419 cggtggtatttagcatgcacaaatgatagatttgtgcaccat 460  Q
    |||||| |||||||||||||||||| || |||||||||||||    
T  9875413 cggtggcatttagcatgcacaaatgttaaatttgtgcaccat 9875372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 99; Significance: 1e-48; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 426 - 560
Target Start/End: Complemental strand, 91339 - 91205
Alignment:
Q  426 atttagcatgcacaaatgatagatttgtgcaccatgcacaattttcccatggaaggacagctgtaggtaaattacctgctagaatattttaatgtttcat 525  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| || ||||||||||   |||    
T  91339 atttagtatgcacaaatgatagatttgtgcaccatgcacaattttcccatggaaggacagctgtcggtaatttacctgctggattattttaatgaaacat 91240  T
Q  526 attatattgtaaaatattcatttattgtctctgct 560  Q
    |||||||||||||||||||||||||||| ||||||    
T  91239 attatattgtaaaatattcatttattgtttctgct 91205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 93; Significance: 5e-45; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 426 - 558
Target Start/End: Original strand, 24016697 - 24016829
Alignment:
Q  426 atttagcatgcacaaatgatagatttgtgcaccatgcacaattttcccatggaaggacagctgtaggtaaattacctgctagaatattttaatgtttcat 525  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| ||||||||| || ||||||||||   |||    
T  24016697 atttagtatgcacaaatgatagatttgtgcaccatgcacaattttcccatggaaggacagctgacggtaatttacctgctggattattttaatgaaacat 24016796  T
Q  526 attatattgtaaaatattcatttattgtctctg 558  Q
    |||||||||||||||||||||||||||| ||||    
T  24016797 attatattgtaaaatattcatttattgtttctg 24016829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 420 - 560
Target Start/End: Complemental strand, 2197076 - 2196936
Alignment:
Q  420 ggtggtatttagcatgcacaaatgatagatttgtgcaccatgcacaattttcccatggaaggacagctgtaggtaaattacctgctagaatattttaatg 519  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||  ||||| |||||| || |||||||||||||    
T  2197076 ggtggcatttagcatgcacaaatgatagatttgtgcaccatgcacaatttttgtatggaaggacagctggcggtaatttacctactggaatattttaatg 2196977  T
Q  520 tttcatattatattgtaaaatattcatttattgtctctgct 560  Q
       ||||||||||||||||||||||||||||||| ||||||    
T  2196976 aaacatattatattgtaaaatattcatttattgtttctgct 2196936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 426 - 560
Target Start/End: Original strand, 629814 - 629949
Alignment:
Q  426 atttagcatgcacaaatgatagatttgtgcaccatgcacaattttcccatggaaggacagctgtaggtaaattacctgctagaatattttaatgtttcat 525  Q
    |||||| ||||||||||   ||||||||||||||||||||||||| |||||||||||||||||  ||||| ||||||||| ||||||||||||     ||    
T  629814 atttagaatgcacaaatacaagatttgtgcaccatgcacaatttttccatggaaggacagctggcggtaatttacctgctggaatattttaatcaaaaat 629913  T
Q  526 attatattgtaaaatatt-catttattgtctctgct 560  Q
    ||||||||||| |||||| |||||||||| ||||||    
T  629914 attatattgtataatattccatttattgtttctgct 629949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 426 - 466
Target Start/End: Original strand, 31098706 - 31098746
Alignment:
Q  426 atttagcatgcacaaatgatagatttgtgcaccatgcacaa 466  Q
    ||||||||||||||||| ||| |||||||||||||||||||    
T  31098706 atttagcatgcacaaattataaatttgtgcaccatgcacaa 31098746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 419 - 466
Target Start/End: Original strand, 1569577 - 1569624
Alignment:
Q  419 cggtggtatttagcatgcacaaatgatagatttgtgcaccatgcacaa 466  Q
    |||||| |||||||||||||||  || |||||||||||||||||||||    
T  1569577 cggtggcatttagcatgcacaagggaaagatttgtgcaccatgcacaa 1569624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 89; Significance: 1e-42; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 420 - 560
Target Start/End: Complemental strand, 22292845 - 22292705
Alignment:
Q  420 ggtggtatttagcatgcacaaatgatagatttgtgcaccatgcacaattttcccatggaaggacagctgtaggtaaattacctgctagaatattttaatg 519  Q
    ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||    |||||||| |||||||||||||    
T  22292845 ggtggcatttagtatgcacaaatgatagatttgtgcaccatgcacaattttcccatggaaggacagctggcggtttcatacctgctggaatattttaatg 22292746  T
Q  520 tttcatattatattgtaaaatattcatttattgtctctgct 560  Q
       ||||||||||||||||||||||||||||||| ||||||    
T  22292745 aaacatattatattgtaaaatattcatttattgtttctgct 22292705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 420 - 485
Target Start/End: Complemental strand, 13579080 - 13579015
Alignment:
Q  420 ggtggtatttagcatgcacaaatgatagatttgtgcaccatgcacaattttcccatggaaggacag 485  Q
    ||||| |||||| |||||||||||  ||||||||||| ||||||||| ||   |||||||||||||    
T  13579080 ggtggcatttagtatgcacaaatgcaagatttgtgcatcatgcacaacttgtgcatggaaggacag 13579015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 77; Significance: 2e-35; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 244 - 320
Target Start/End: Original strand, 5242404 - 5242480
Alignment:
Q  244 ggactagtggcttataagcaggttgattaaaattgtaaataacacattattttttccactatccatttatttacgtt 320  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5242404 ggactagtggcttataagcaggttgattaaaattgtaaataacacattattttttccactatccatttatttacgtt 5242480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 106 - 184
Target Start/End: Original strand, 5242266 - 5242344
Alignment:
Q  106 aggccgatcaggtcctaacttccaaagcttgtgtttgcaaatttttgagcaattcacggagtctattgagcgatcatct 184  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  5242266 aggccgatcaggtcctaacttccaatgcttgtgtttgcaaatttttgagcaattcacggagtttattgagcgatcatct 5242344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 359 - 419
Target Start/End: Original strand, 5242502 - 5242562
Alignment:
Q  359 cctttgaatttgaaatgtaatttcttttgatttgttgtcattgaattgtattgatatatac 419  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||    
T  5242502 cctttgaatttgaaatgtaatttcttttgatttgttgtcattgcattgaatcgatatatac 5242562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 497 - 560
Target Start/End: Complemental strand, 27052688 - 27052624
Alignment:
Q  497 ttacctgctagaatattttaatgtttcatattatattgtaaaatatt-catttattgtctctgct 560  Q
    ||||||||| |||||||||||||   ||||||||||||||||||||| |||||||||| ||||||    
T  27052688 ttacctgctggaatattttaatgaaacatattatattgtaaaatattccatttattgtttctgct 27052624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 409 - 466
Target Start/End: Complemental strand, 51311700 - 51311643
Alignment:
Q  409 ttgatatatacggtggtatttagcatgcacaaatgatagatttgtgcaccatgcacaa 466  Q
    |||||||||| ||||| ||||||||||||||||  ||| ||||||||||||| |||||    
T  51311700 ttgatatatatggtggcatttagcatgcacaaagtataaatttgtgcaccatacacaa 51311643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 52
Target Start/End: Original strand, 5234429 - 5234461
Alignment:
Q  20 agttgctcatcacattggatcgcaaatagacac 52  Q
    |||||||||||||||||||||||||||||||||    
T  5234429 agttgctcatcacattggatcgcaaatagacac 5234461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 420 - 466
Target Start/End: Complemental strand, 38635010 - 38634964
Alignment:
Q  420 ggtggtatttagcatgcacaaatgatagatttgtgcaccatgcacaa 466  Q
    ||||| ||||||||||||||| ||||| ||||||||| |||||||||    
T  38635010 ggtggcatttagcatgcacaattgataaatttgtgcatcatgcacaa 38634964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 417 - 466
Target Start/End: Original strand, 48734907 - 48734956
Alignment:
Q  417 tacggtggtatttagcatgcacaaatgatagatttgtgcaccatgcacaa 466  Q
    |||||||| |||||| ||||||||||   |||||||||||||||||||||    
T  48734907 tacggtggcatttagaatgcacaaatataagatttgtgcaccatgcacaa 48734956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 426 - 466
Target Start/End: Complemental strand, 8674733 - 8674693
Alignment:
Q  426 atttagcatgcacaaatgatagatttgtgcaccatgcacaa 466  Q
    |||||| ||||||||||| |||||||||||||||| |||||    
T  8674733 atttaggatgcacaaatgttagatttgtgcaccatacacaa 8674693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1603 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: scaffold1603
Description:

Target: scaffold1603; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 426 - 560
Target Start/End: Complemental strand, 326 - 192
Alignment:
Q  426 atttagcatgcacaaatgatagatttgtgcaccatgcacaattttcccatggaaggacagctgtaggtaaattacctgctagaatattttaatgtttcat 525  Q
    |||||| ||||||||||   | |||||||||||||||||||||||||||||||| ||||||||  ||||| |||||| || |||||||||||||   |||    
T  326 atttagaatgcacaaatataaaatttgtgcaccatgcacaattttcccatggaatgacagctggtggtaatttaccttctggaatattttaatgaaacat 227  T
Q  526 attatattgtaaaatattcatttattgtctctgct 560  Q
    |||||||||||||||||||||||||||| ||||||    
T  226 attatattgtaaaatattcatttattgtttctgct 192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 3e-28; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 420 - 560
Target Start/End: Complemental strand, 13926195 - 13926055
Alignment:
Q  420 ggtggtatttagcatgcacaaatgatagatttgtgcaccatgcacaattttcccatggaaggacagctgtaggtaaattacctgctagaatattttaatg 519  Q
    ||||| |||||| ||||||||||   ||||||||||||||||||||| |||   |||||||||||||||  ||||| ||||||||| ||||||||||||     
T  13926195 ggtggcatttagaatgcacaaatacaagatttgtgcaccatgcacaacttttgtatggaaggacagctggcggtaatttacctgctggaatattttaata 13926096  T
Q  520 tttcatattatattgtaaaatattcatttattgtctctgct 560  Q
       ||||||||||| ||||||||||||||||||| ||||||    
T  13926095 aaacatattatattataaaatattcatttattgtttctgct 13926055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 420 - 466
Target Start/End: Original strand, 19794397 - 19794443
Alignment:
Q  420 ggtggtatttagcatgcacaaatgatagatttgtgcaccatgcacaa 466  Q
    ||||| ||||||||||||||| ||||| |||||||||||||||||||    
T  19794397 ggtggcatttagcatgcacaattgataaatttgtgcaccatgcacaa 19794443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 497 - 560
Target Start/End: Original strand, 38656968 - 38657032
Alignment:
Q  497 ttacctgctagaatattttaatgtttcatattatattgtaaaata-ttcatttattgtctctgct 560  Q
    ||||||||| |||||||||||||   ||||||||||||||||||| || ||||||||| ||||||    
T  38656968 ttacctgctggaatattttaatgaaacatattatattgtaaaatattttatttattgtttctgct 38657032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 419 - 466
Target Start/End: Complemental strand, 15746734 - 15746687
Alignment:
Q  419 cggtggtatttagcatgcacaaatgatagatttgtgcaccatgcacaa 466  Q
    |||||| |||||||||||||||  || |||||||||||||||||||||    
T  15746734 cggtggcatttagcatgcacaagggaaagatttgtgcaccatgcacaa 15746687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 420 - 466
Target Start/End: Complemental strand, 13931897 - 13931851
Alignment:
Q  420 ggtggtatttagcatgcacaaatgatagatttgtgcaccatgcacaa 466  Q
    ||||| |||||||||||||||  || |||||||||||||||||||||    
T  13931897 ggtggcatttagcatgcacaagggaaagatttgtgcaccatgcacaa 13931851  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 497 - 560
Target Start/End: Original strand, 8943032 - 8943096
Alignment:
Q  497 ttacctgctagaatattttaatgtttcatattatattgtaaaatatt-catttattgtctctgct 560  Q
    ||||||||| ||||||||||||     |||||||||||||||||||| |||||||||| ||||||    
T  8943032 ttacctgctggaatattttaatcaaaaatattatattgtaaaatattccatttattgtttctgct 8943096  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 418 - 466
Target Start/End: Original strand, 21460128 - 21460176
Alignment:
Q  418 acggtggtatttagcatgcacaaatgatagatttgtgcaccatgcacaa 466  Q
    ||||||| |||||| ||||||||||| || ||||||| |||||||||||    
T  21460128 acggtggcatttaggatgcacaaatgttaaatttgtgtaccatgcacaa 21460176  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 497 - 560
Target Start/End: Complemental strand, 29075980 - 29075916
Alignment:
Q  497 ttacctgctagaatattttaatgtttcatattatattgtaaaatatt-catttattgtctctgct 560  Q
    ||||||||| |||||||||||||   ||||||||||||||||||||| |||||||||| ||||||    
T  29075980 ttacctgctggaatattttaatgaaacatattatattgtaaaatattccatttattgtttctgct 29075916  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 420 - 466
Target Start/End: Complemental strand, 12524188 - 12524142
Alignment:
Q  420 ggtggtatttagcatgcacaaatgatagatttgtgcaccatgcacaa 466  Q
    |||||||||||||||||||||  || |||||||||||||||||||||    
T  12524188 ggtggtatttagcatgcacaagagaaagatttgtgcaccatgcacaa 12524142  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 497 - 553
Target Start/End: Complemental strand, 15573404 - 15573347
Alignment:
Q  497 ttacctgctagaatattttaatgtttcatattatattgtaaaatatt-catttattgt 553  Q
    ||||||||| |||||||||||||   ||||||||||||||||||||| ||||||||||    
T  15573404 ttacctgctggaatattttaatgaaacatattatattgtaaaatattccatttattgt 15573347  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 417 - 466
Target Start/End: Original strand, 33473862 - 33473911
Alignment:
Q  417 tacggtggtatttagcatgcacaaatgatagatttgtgcaccatgcacaa 466  Q
    |||||||| |||||| |||||||| || || |||||||||||||||||||    
T  33473862 tacggtggcatttagtatgcacaagtgttaaatttgtgcaccatgcacaa 33473911  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 418 - 469
Target Start/End: Complemental strand, 31893505 - 31893454
Alignment:
Q  418 acggtggtatttagcatgcacaaatgatagatttgtgcaccatgcacaattt 469  Q
    ||||||| |||||| ||||||||||   ||||||||||||||||||||||||    
T  31893505 acggtggcatttagaatgcacaaatacaagatttgtgcaccatgcacaattt 31893454  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 424 - 466
Target Start/End: Original strand, 44308428 - 44308470
Alignment:
Q  424 gtatttagcatgcacaaatgatagatttgtgcaccatgcacaa 466  Q
    |||||||| ||||||||||| |||||||||||||||| |||||    
T  44308428 gtatttaggatgcacaaatgttagatttgtgcaccatacacaa 44308470  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 497 - 560
Target Start/End: Original strand, 11758943 - 11759007
Alignment:
Q  497 ttacctgctagaatattttaatgtttcatattatattgtaaaatatt-catttattgtctctgct 560  Q
    ||||||||| ||| |||||||||   ||||| ||||||||||||||| |||||||||| ||||||    
T  11758943 ttacctgctggaacattttaatgaaacatataatattgtaaaatattccatttattgtttctgct 11759007  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 420 - 460
Target Start/End: Complemental strand, 34134158 - 34134118
Alignment:
Q  420 ggtggtatttagcatgcacaaatgatagatttgtgcaccat 460  Q
    ||||| |||||||||||||||||| || |||||||||||||    
T  34134158 ggtggcatttagcatgcacaaatgttaaatttgtgcaccat 34134118  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 497 - 560
Target Start/End: Complemental strand, 52616485 - 52616421
Alignment:
Q  497 ttacctgctagaatattttaatgtttcatattatattgtaaaatatt-catttattgtctctgct 560  Q
    ||||||||| |||||||||||||    ||||||||||||| |||||| |||||||||| ||||||    
T  52616485 ttacctgctggaatattttaatgaaaaatattatattgtataatattccatttattgtttctgct 52616421  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 507 - 560
Target Start/End: Original strand, 13736611 - 13736665
Alignment:
Q  507 gaatattttaatgtttcatattatattgtaaaatatt-catttattgtctctgct 560  Q
    |||||||||||||   ||||||||||||||||||||| |||||||||| ||||||    
T  13736611 gaatattttaatgaaacatattatattgtaaaatattccatttattgtttctgct 13736665  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 420 - 460
Target Start/End: Complemental strand, 28804220 - 28804180
Alignment:
Q  420 ggtggtatttagcatgcacaaatgatagatttgtgcaccat 460  Q
    ||||| ||||| ||||||||||||||| |||||||||||||    
T  28804220 ggtggcatttaacatgcacaaatgataaatttgtgcaccat 28804180  T

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Target: scaffold0604 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0604
Description:

Target: scaffold0604; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 421 - 466
Target Start/End: Original strand, 7217 - 7262
Alignment:
Q  421 gtggtatttagcatgcacaaatgatagatttgtgcaccatgcacaa 466  Q
    |||| |||||| |||||||||||  |||||||||||||||||||||    
T  7217 gtggcatttagtatgcacaaatgtaagatttgtgcaccatgcacaa 7262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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