View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3237_high_15 (Length: 565)
Name: NF3237_high_15
Description: NF3237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3237_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 273 - 547
Target Start/End: Original strand, 20070230 - 20070503
Alignment:
| Q |
273 |
tttcaatggtttgtaggggtgaaagtataagtggtatcggtataagtagatctggttaaacgacatgttaaagcccactacaactataaggtgatcccat |
372 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |
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| T |
20070230 |
tttcaatggtttgtaggggttaaagtataagtggtatcggtataagtagatctggttaaacgaaatgttaaagcccactacaactataaggggatcccat |
20070329 |
T |
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| Q |
373 |
atgactgactttaaactgggagatttagtactccaaacagtggatgtaaaataaaatgcctaccaagggaaacttattgataattaggaaaacccatacc |
472 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||| ||||||||||||||||||||||||||||| |
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| T |
20070330 |
atgactgactttaaactgggagatttagtactccaaacagtggatgtaaaaaacaatgtctaccaaggggaacttattgataattaggaaaacccataca |
20070429 |
T |
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| Q |
473 |
agatccttaatgagtacgtggacatgagcctacaaacttgaaaattttaataaggttcgcattatgaggattttg |
547 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |
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| T |
20070430 |
agat-cttaatgagtacgtggacatgagcctacaaacttgaaaaattaaataaggttcgcattatgaggattttg |
20070503 |
T |
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