View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3237_high_17 (Length: 551)
Name: NF3237_high_17
Description: NF3237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3237_high_17 |
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Alignment Details
Target: chr8 (Bit Score: 450; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 7 - 476
Target Start/End: Complemental strand, 22329066 - 22328597
Alignment:
| Q |
7 |
gaagcaaaggacggtttatcggatacgccgtcgtgttcctcttcaccctgaattcgtgctggtatacgaaagcctgagaatccaccaccagagacagaag |
106 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22329066 |
gaagcagaggacggtttatcggatacgccgtcgtgttcctcttcaccctgaattcgtgctggtatacgaaagcctgagaatccaccaccagagacagaag |
22328967 |
T |
|
| Q |
107 |
cctgatggatcatcggcgaaagatagtgatgatggtgatcaacgatattcgccgtcgccattgaaggatctatccaagcacgaactgaaggattgtaact |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22328966 |
cctgatggatcatcggcgaaagatagtgatgatggtgatcaacgatattcgccgtcgccattgaaggatctatccaagcacgaactgaaggattgtaact |
22328867 |
T |
|
| Q |
207 |
ggactgaaggggtcccctctgagtaaaaaactgaccataaccgccaaacgccggtgccggtgtactgaacacaaatccagcaccatggccactgttgcca |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
22328866 |
ggactgaaggggtcccctctgagtaaaaaactgaccataaccgccaaacgccggtgccggtgtactgaacacaaatccagcaccatggccactgttacca |
22328767 |
T |
|
| Q |
307 |
ccatctgcagcattagcattaacattattagcattccaagccatcattctatgcaatctgccgttatcatgttcctcttgatgctgatgctgttgttgct |
406 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
22328766 |
ccatctgcagcattagcattaatattattagcattccaagccatcattctattcaatctgccgttatcatgttcctcttgatgctgctgctgttgttgct |
22328667 |
T |
|
| Q |
407 |
gctcagaccacaaggtgcttccacttccaccaccgtcgtaaccaagggaggagtttccggcgaaaagcac |
476 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22328666 |
gctcagaccacaaggtgcttccacttccaccaccgtcgtaaccaagggaggagtttccggcgaaaagcac |
22328597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 285 - 392
Target Start/End: Original strand, 2534998 - 2535105
Alignment:
| Q |
285 |
agcaccatggccactgttgccaccatctgcagcattagcattaacattattagcattccaagccatcattctatgcaatctgccgttatcatgttcctct |
384 |
Q |
| |
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|||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||| |
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| T |
2534998 |
agcaccatggccactgttaccaccatctacagcattagcattaacattattagcattccaagccatcattctatgcaatctaccactatcatgatcctct |
2535097 |
T |
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| Q |
385 |
tgatgctg |
392 |
Q |
| |
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|| ||||| |
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| T |
2535098 |
tgctgctg |
2535105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 5e-42; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 285 - 392
Target Start/End: Complemental strand, 11447860 - 11447753
Alignment:
| Q |
285 |
agcaccatggccactgttgccaccatctgcagcattagcattaacattattagcattccaagccatcattctatgcaatctgccgttatcatgttcctct |
384 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
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| T |
11447860 |
agcaccatggccactgttaccaccatctgcagcattagcattaacattattagcattccaagccatcattctatgcaatctaccactatcatgttcctct |
11447761 |
T |
|
| Q |
385 |
tgatgctg |
392 |
Q |
| |
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|| ||||| |
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|
| T |
11447760 |
tgctgctg |
11447753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 174 - 227
Target Start/End: Complemental strand, 32507075 - 32507022
Alignment:
| Q |
174 |
atctatccaagcacgaactgaaggattgtaactggactgaaggggtcccctctg |
227 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32507075 |
atctaaccaagcacgaactgaaggattgtaactggactgaaggggtcccctctg |
32507022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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