View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3237_high_19 (Length: 530)
Name: NF3237_high_19
Description: NF3237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3237_high_19 |
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Alignment Details
Target: chr3 (Bit Score: 414; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 1 - 516
Target Start/End: Complemental strand, 24617777 - 24617278
Alignment:
| Q |
1 |
attacatgcctctcttttcaaatagaagtgtagatacttggtttgttatttttnnnnnnntaattaaaccttgtgaattttacattgaatcatgctgtga |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
24617777 |
attacatgcctctcttttcaaatagaagtgtagatacttggtttgttatttttaaaaaaataattaaaccttgtgaattttacattgaatcatgctgtga |
24617678 |
T |
|
| Q |
101 |
tgaaatacatgtgttggcacataaatagagacacattagttttgaaatcagatgttactaaaggggaaggatcggaatctcgtgatggagatttggtcga |
200 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
24617677 |
tgaaatacatgtgttggcacataaatagggacacattagttttgaaatcagatgttactaaaggggaaggatcggaatctcgtgatggagatttggttga |
24617578 |
T |
|
| Q |
201 |
attcaattatgtatgcaggcatgcagatggatacattgttttcaggtaatttcatactgtgaattttcccctttattgtgtttaagccaatatatatgac |
300 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
24617577 |
attcaatcatgtatgcaggcatgcagatggatacattgttttcaggtaatgtcatactgtgaattttccccttaattgtgtttaagccaatatatatgac |
24617478 |
T |
|
| Q |
301 |
cttaaaactatcctaatgttgcttggttttatactctaattcaatacagtgcagtaaaaagtggaaatagagcaatcaacttgcttcactgttcctaaat |
400 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24617477 |
cttaaaactgtcctaatgttgcttggttttatactctaattcaatacagtgcagtaaaaagtggaaatagagcaatcaacttgcttcactgttcctaaat |
24617378 |
T |
|
| Q |
401 |
atatcaccttggtaaaaacaatctttaagctctttacagatctctgatgttacagatcgatgcaacaaaaccatgatcttataattgtgttgcatcgatc |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
24617377 |
atatcaccttggtaaaaacaatctttaagctctttaca----------------gatcgatgcaacaaaaccatgatcttataatcgtgttgcatcgatc |
24617294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 392
Target Start/End: Original strand, 24105942 - 24106333
Alignment:
| Q |
1 |
attacatgcctctcttttcaaatagaagtgtagatacttggtttgttatttttnnnnnnntaattaaaccttgtgaattttacattgaatcatgctgtga |
100 |
Q |
| |
|
||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
24105942 |
attacatgcctcttttttcaaatagaagtgcagatacttggtttgttattttaaaaaaaataattaaaccttgtgaattttacattgaatcaagctgtga |
24106041 |
T |
|
| Q |
101 |
tgaaatacatgtgttggcacataaatagagacacattagttttgaaatcagatgttactaaaggggaaggatcggaatctcgtgatggagatttggtcga |
200 |
Q |
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|||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| || |
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| T |
24106042 |
agaaatacatgtgttagcgcataaatagagacacattagttttgaaatcagatgttactaaaggggaaggaccagaatctcgtgatggagatttggttga |
24106141 |
T |
|
| Q |
201 |
attcaattatgtatgcaggcatgcagatggatacattgttttcaggtaatttcatactgtgaattttcccctttattgtgtttaagccaatatatatgac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24106142 |
attcaattatgtatgcaggcatgcagatggatactttgttttcaggtaatttcatactgtgaattttcccctttattgtgtttaagccaatatatatgac |
24106241 |
T |
|
| Q |
301 |
cttaaaactatcctaatgttgcttggttttatactctaattcaatacagtgcagtaaaaagtggaaatagagcaatcaacttgcttcactgt |
392 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||| ||| |||||| || ||||||| ||||||||||||||||||||||| |
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| T |
24106242 |
cttaaaactgtcctaatgttgcttggttttatactctaattcaatatagtacagtaataaatggaaatggagcaatcaacttgcttcactgt |
24106333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 135 - 392
Target Start/End: Original strand, 24113423 - 24113679
Alignment:
| Q |
135 |
attagttttgaaatcagatgttactaaaggggaaggatcggaatctcgtgatggagatttggtcgaattcaattatgtatgcaggcatgcagatggatac |
234 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
24113423 |
attagtttt-aaatcagatgttactaaagtggaaggaccggaatcacgtgatggagatttggttgaattcaattatgtatgcaggcatgcagatggatac |
24113521 |
T |
|
| Q |
235 |
attgttttcaggtaatttcatactgtgaattttcccctttattgtgtttaagccaatatatatgaccttaaaactatcctaatgttgcttggttttatac |
334 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
24113522 |
tttgttttcaggtaatttcatactgtgaattttcccctttattgtgtttaagccaatatatatgaccttaaaactgtcctaatgttgcttggttttatac |
24113621 |
T |
|
| Q |
335 |
tctaattcaatacagtgcagtaaaaagtggaaatagagcaatcaacttgcttcactgt |
392 |
Q |
| |
|
|||||||||||| ||| |||||| || ||||||| ||||||||||||||||||||||| |
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| T |
24113622 |
tctaattcaatatagtacagtaataaatggaaatggagcaatcaacttgcttcactgt |
24113679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 103 - 270
Target Start/End: Original strand, 24101665 - 24101834
Alignment:
| Q |
103 |
aaatacatgtgttggcacataaatagagac--acattagttttgaaatcagatgttactaaaggggaaggatcggaatctcgtgatggagatttggtcga |
200 |
Q |
| |
|
||||||||||||| ||||||||||||| || | ||||||||| |||| || ||||||| ||||||||||| | ||| | | | || |||||||| || |
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|
| T |
24101665 |
aaatacatgtgttagcacataaatagatacttatattagttttcaaattagttgttactgaaggggaaggaccagaagcacacgggggcgatttggttga |
24101764 |
T |
|
| Q |
201 |
attcaattatgtatgcaggcatgcagatggatacattgttttcaggtaatttcatactgtgaattttccc |
270 |
Q |
| |
|
|||||||| ||||||||| | |||| |||||||| |||||||||||| ||||||| | ||||||||||| |
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|
| T |
24101765 |
attcaattgtgtatgcagacgtgcaaatggatactttgttttcaggtgatttcatgatatgaattttccc |
24101834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 160 - 214
Target Start/End: Complemental strand, 24616925 - 24616871
Alignment:
| Q |
160 |
aaaggggaaggatcggaatctcgtgatggagatttggtcgaattcaattatgtat |
214 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
24616925 |
aaaggggaaggaccggaatctcgtgatggagatttggttgaattcaattatgtat |
24616871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 24113364 - 24113410
Alignment:
| Q |
1 |
attacatgcctctcttttcaaatagaagtgtagatacttggtttgttatt |
50 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| |||||||||| |
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|
| T |
24113364 |
attacatgcctct---ttcaaatagaagtgtagatacttagtttgttatt |
24113410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 306 - 356
Target Start/End: Original strand, 24101934 - 24101984
Alignment:
| Q |
306 |
aactatcctaatgttgcttggttttatactctaattcaatacagtgcagta |
356 |
Q |
| |
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|||| ||||||||||||||||||| ||||||||||||| || ||| ||||| |
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|
| T |
24101934 |
aactgtcctaatgttgcttggtttcatactctaattcactatagtacagta |
24101984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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