View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3237_high_22 (Length: 506)
Name: NF3237_high_22
Description: NF3237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3237_high_22 |
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Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-113; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 274 - 485
Target Start/End: Original strand, 46353645 - 46353856
Alignment:
| Q |
274 |
gatagagaaagaggtggagggttgattaacgtgttttttggaatttgcaaaggaagggatttagatgaaacagttatttgaagataaagttggtccaatt |
373 |
Q |
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| T |
46353645 |
gatagagaaagatgtggagggttgattaacgtgttttttggaatttgcaaaggaagggatttagatgaaacagttatttgaagataaagttggtccaatt |
46353744 |
T |
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| Q |
374 |
gaacgtgtttttgtttgggatcattcattcagatgcgcctcgactaggcaatgttgttataattttttcattttattatattatatgctctttgattatt |
473 |
Q |
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| T |
46353745 |
gaacgtgtttttgtttgggatcattcattcagatgcgcctcgactaggcaatgttgttataattttttcattttattatattatatgctctttgattatt |
46353844 |
T |
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| Q |
474 |
gtttgtaggcaa |
485 |
Q |
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| T |
46353845 |
gtttgtaggcaa |
46353856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 13 - 221
Target Start/End: Original strand, 46353387 - 46353595
Alignment:
| Q |
13 |
aatattggatagcaagtacaaaattgtttttaacatgtataattgaccatgttgagtaggacctaatcctccttagttaacactaattagcaatgacgat |
112 |
Q |
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| T |
46353387 |
aatattggatagcaagtacaaaattgtttttaacatgtataattgaccatgttgagtaggacctaatcctccttagttaacactaattagcaatgacgat |
46353486 |
T |
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| Q |
113 |
tacaatgtaaattgctgatttgacaagaagtaataataagtagattgtaagtaacccttcgaaaattggacattatattttggcttaaccatattgctta |
212 |
Q |
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| T |
46353487 |
tacaatgtaaattactgatttgacaacaagtaataataagtagattgtaagtaacccttcgaaaattggacattatattttggcttaaccatattgctta |
46353586 |
T |
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| Q |
213 |
ttacaattc |
221 |
Q |
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| T |
46353587 |
ttacaattc |
46353595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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