View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3237_high_26 (Length: 484)
Name: NF3237_high_26
Description: NF3237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3237_high_26 |
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Alignment Details
Target: chr5 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 13 - 463
Target Start/End: Complemental strand, 42424314 - 42423866
Alignment:
| Q |
13 |
aatatgtactgatttaaattatttacgcataaaatcgaataatgatcaagttgacatnnnnnnnnncgattaagttgaacaatggaaaataaaatagaag |
112 |
Q |
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| T |
42424314 |
aatatgtactgatttaaattatttacgcataaaatcgaataatgatcaagttgacataaaaaaaa-cgattaagttgaacaatggaaaataaaatagaag |
42424216 |
T |
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| Q |
113 |
atagaaacactttcatatgatcaattcaaaa-atcacaaccacaattcacaccagaaaaaacaaaacctaagtttaaattcaataatattaggtttaatt |
211 |
Q |
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|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42424215 |
atagaaacactttcat--gatcaattcaaaacatcacaaccacaattcacaccagaaaaaacaaaacctaagtttaaattcaataatattaggtttaatt |
42424118 |
T |
|
| Q |
212 |
tctaaggtaaacattaaagcccacgattctttttcattcatcagattcaacttcgtcgcccttaaaagtccaactattcctttgacgaacttcagcctct |
311 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
42424117 |
tctaaggtaaacattaaagctcacgattctttttcattcatcaggttcgacttcgtcgcctttaaaagtccaactattcctttgacgaacttcagcctct |
42424018 |
T |
|
| Q |
312 |
tccttgggcgtaaaatcattctcaacaccgaaatactctctcacataaccaacgttcttgttcttaatccgatcagcaacaaccccagtcagaagctcaa |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42424017 |
tccttgggcgtaaaatcattctcaacaccgaaatactctctcacataaccaacgttcttgttcttaatccgatcagcaacaaccccagtcagaagctcaa |
42423918 |
T |
|
| Q |
412 |
aaagactctccatattcaagtaatgcactgcaagaagaaactctttcacctc |
463 |
Q |
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| T |
42423917 |
aaagactctccatattcaagtaatgcactgcaagaagaaactccttcacctc |
42423866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 306 - 459
Target Start/End: Original strand, 6062634 - 6062787
Alignment:
| Q |
306 |
gcctcttccttgggcgtaaaatcattctcaacaccgaaatactctctcacataaccaacgttcttgttcttaatccgatcagcaacaaccccagtcagaa |
405 |
Q |
| |
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|||||||||| | ||||| ||||||||| | ||| ||||| | ||||||||| |||| ||||| ||||| |||||||| |||||| || ||||| || |
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| T |
6062634 |
gcctcttcctccgccgtaagatcattctcgataccaaaatagtttctcacatacacaacattcttattcttgatccgatccgcaacagcctgagtcaaaa |
6062733 |
T |
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| Q |
406 |
gctcaaaaagactctccatattcaagtaatgcactgcaagaagaaactctttca |
459 |
Q |
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| T |
6062734 |
cctcaaaaagactctccatattcaagtaatgaacagcaagaagaaactccttca |
6062787 |
T |
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