View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3237_high_29 (Length: 476)

Name: NF3237_high_29
Description: NF3237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3237_high_29
NF3237_high_29
[»] chr6 (4 HSPs)
chr6 (21-310)||(3186000-3186274)
chr6 (370-427)||(9960-10014)
chr6 (370-427)||(12686-12740)
chr6 (370-427)||(17721-17775)
[»] chr8 (3 HSPs)
chr8 (11-247)||(42391894-42392134)
chr8 (370-427)||(11676253-11676307)
chr8 (373-427)||(7840053-7840104)
[»] chr3 (6 HSPs)
chr3 (33-114)||(38411481-38411562)
chr3 (370-425)||(27221385-27221441)
chr3 (370-427)||(2544961-2545015)
chr3 (370-427)||(35127233-35127287)
chr3 (370-427)||(36429987-36430041)
chr3 (372-427)||(46278504-46278556)
[»] chr4 (3 HSPs)
chr4 (370-427)||(28071472-28071526)
chr4 (370-427)||(50063731-50063785)
chr4 (370-425)||(25536720-25536772)
[»] chr5 (2 HSPs)
chr5 (370-427)||(2643687-2643741)
chr5 (370-398)||(11015984-11016012)
[»] chr1 (1 HSPs)
chr1 (369-427)||(35754007-35754062)


Alignment Details
Target: chr6 (Bit Score: 193; Significance: 1e-105; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 21 - 310
Target Start/End: Complemental strand, 3186274 - 3186000
Alignment:
Q  21 aaagtaaagtcgaacctgaaggaattcagataccccaatttctccaacagctgccatataatcgatcaa-gtattgggaagctctgaaatagagagagag 119  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||||    
T  3186274 aaagtaatgtcgaacctgaaggaattcagataccccaatttctccagcagctgccatatactcgatcaaagtattgggaagctctgaaatagagagagag 3186175  T
Q  120 agagagnnnnnnnnnncttaagagaactaaaagaaaagtcgaagtgaaaagaagtgtacaatggtgtgtgtaagtatattttggtgagaatgaatgaata 219  Q
    | |             |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  3186174 aaa------------actta-gagaactaaaagaaaagtcgaagtgaaaagaagtgtagaatggtgtgtgtaagtatattttggtgagaatgaatgaata 3186088  T
Q  220 aagtttataccttttgaactaagggtggtgggtgcagagtagagtaacagagatgatggttgaacttgcacagtgattttctgtagaagag 310  Q
    ||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  3186087 aagtttataccttttgaactaagg---gtgggtgcagagtagagtaacagagatgatggttgcacttgcacagtgattttctgtagaagag 3186000  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 370 - 427
Target Start/End: Complemental strand, 10014 - 9960
Alignment:
Q  370 caaggtttcaaaaaacggaccggtaccggggggattacggccgttacaaatcggtatc 427  Q
    ||||||||||||||| |||||||||||   |||||| ||||||||||||| |||||||    
T  10014 caaggtttcaaaaaaaggaccggtacc---gggattgcggccgttacaaaacggtatc 9960  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 370 - 427
Target Start/End: Complemental strand, 12740 - 12686
Alignment:
Q  370 caaggtttcaaaaaacggaccggtaccggggggattacggccgttacaaatcggtatc 427  Q
    ||||||||||||||| |||||||||||   |||||| ||||||||||||| |||||||    
T  12740 caaggtttcaaaaaaaggaccggtacc---gggattgcggccgttacaaaacggtatc 12686  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 370 - 427
Target Start/End: Complemental strand, 17775 - 17721
Alignment:
Q  370 caaggtttcaaaaaacggaccggtaccggggggattacggccgttacaaatcggtatc 427  Q
    ||||||||||||||| |||||||||||   |||||| ||||||||||||| |||||||    
T  17775 caaggtttcaaaaaaaggaccggtacc---gggattgcggccgttacaaaacggtatc 17721  T

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Target: chr8 (Bit Score: 151; Significance: 1e-79; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 11 - 247
Target Start/End: Original strand, 42391894 - 42392134
Alignment:
Q  11 caaagggaataaagtaaagtcgaacctgaaggaattcagataccccaatttctccaacagctgccatataatcgatcaagtattgggaagctctgaaata 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||||    
T  42391894 caaagggaataaagtaaagtcgaacctgaaggaattcagataccccaacttctccagcagctgccatatactcgatcaagtattgggaagctctgaaata 42391993  T
Q  111 gagagaga--gagagagnnnnnnnnnncttaagagaactaaaagaaaagtcgaagtgaaaagaagtgtacaatggtgtgtgtaagtatattt---tggtg 205  Q
    ||||||||  |||||||          ||| | |||| ||||| |||||||||||| |||||||||||||||||||||||||||||||||||   |||||    
T  42391994 gagagagagggagagagaaaaaaacaactt-acagaagtaaaacaaaagtcgaagtaaaaagaagtgtacaatggtgtgtgtaagtatattttggtggtg 42392092  T
Q  206 agaatgaatgaataaagtttataccttttgaactaagggtgg 247  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  42392093 agaatgaatgaataaagtttataccttttgaactaagggtgg 42392134  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 370 - 427
Target Start/End: Original strand, 11676253 - 11676307
Alignment:
Q  370 caaggtttcaaaaaacggaccggtaccggggggattacggccgttacaaatcggtatc 427  Q
    |||||||||||||||| ||||||||||   |||||| |||||||||||||||||||||    
T  11676253 caaggtttcaaaaaacagaccggtacc---gggattgcggccgttacaaatcggtatc 11676307  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 373 - 427
Target Start/End: Complemental strand, 7840104 - 7840053
Alignment:
Q  373 ggtttcaaaaaacggaccggtaccggggggattacggccgttacaaatcggtatc 427  Q
    ||||||||||||||||||||||||   |||||| ||||||||||||| |||||||    
T  7840104 ggtttcaaaaaacggaccggtacc---gggattgcggccgttacaaaacggtatc 7840053  T

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Target: chr3 (Bit Score: 46; Significance: 5e-17; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 33 - 114
Target Start/End: Original strand, 38411481 - 38411562
Alignment:
Q  33 aacctgaaggaattcagataccccaatttctccaacagctgccatataatcgatcaagtattgggaagctctgaaatagaga 114  Q
    ||||||||||||||||||||  ||||||||||||  ||||||||||||  |||||||||| | | |||||||||||||||||    
T  38411481 aacctgaaggaattcagataagccaatttctccagaagctgccatataggcgatcaagtaattgaaagctctgaaatagaga 38411562  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 370 - 425
Target Start/End: Original strand, 27221385 - 27221441
Alignment:
Q  370 caaggtttcaaaaaacggaccggtaccggg-gggattacggccgttacaaatcggta 425  Q
    ||||||||||||||| ||||||||||||||  ||||| ||||||||||||| |||||    
T  27221385 caaggtttcaaaaaaaggaccggtaccgggatggattgcggccgttacaaaacggta 27221441  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 370 - 427
Target Start/End: Original strand, 2544961 - 2545015
Alignment:
Q  370 caaggtttcaaaaaacggaccggtaccggggggattacggccgttacaaatcggtatc 427  Q
    ||||||||||||||| |||||||||||   |||||| ||||||||||||| |||||||    
T  2544961 caaggtttcaaaaaaaggaccggtacc---gggattgcggccgttacaaaacggtatc 2545015  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 370 - 427
Target Start/End: Complemental strand, 35127287 - 35127233
Alignment:
Q  370 caaggtttcaaaaaacggaccggtaccggggggattacggccgttacaaatcggtatc 427  Q
    ||||||||||||||| |||||||||||   |||||| ||||||||||||| |||||||    
T  35127287 caaggtttcaaaaaaaggaccggtacc---gggattgcggccgttacaaaacggtatc 35127233  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 370 - 427
Target Start/End: Original strand, 36429987 - 36430041
Alignment:
Q  370 caaggtttcaaaaaacggaccggtaccggggggattacggccgttacaaatcggtatc 427  Q
    ||||||||||||||| |||||||||||   |||||| ||||||||||||| |||||||    
T  36429987 caaggtttcaaaaaaaggaccggtacc---gggattgcggccgttacaaaacggtatc 36430041  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 427
Target Start/End: Original strand, 46278504 - 46278556
Alignment:
Q  372 aggtttcaaaaaacggaccggtaccggggggattacggccgttacaaatcggtatc 427  Q
    |||||| ||||||||||||||||||   |||||| ||||||||||||| |||||||    
T  46278504 aggtttaaaaaaacggaccggtacc---gggattgcggccgttacaaaacggtatc 46278556  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 370 - 427
Target Start/End: Complemental strand, 28071526 - 28071472
Alignment:
Q  370 caaggtttcaaaaaacggaccggtaccggggggattacggccgttacaaatcggtatc 427  Q
    |||||||||||||||||||||||||||   |||||| ||||||||||||| |||||||    
T  28071526 caaggtttcaaaaaacggaccggtacc---gggattgcggccgttacaaaacggtatc 28071472  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 370 - 427
Target Start/End: Original strand, 50063731 - 50063785
Alignment:
Q  370 caaggtttcaaaaaacggaccggtaccggggggattacggccgttacaaatcggtatc 427  Q
    ||||||||||||||| |||||||||||   |||||| ||||||||||||| |||||||    
T  50063731 caaggtttcaaaaaaaggaccggtacc---gggattgcggccgttacaaaacggtatc 50063785  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 425
Target Start/End: Original strand, 25536720 - 25536772
Alignment:
Q  370 caaggtttcaaaaaacggaccggtaccggggggattacggccgttacaaatcggta 425  Q
    ||||||||||||||| |||||||||||   |||||| ||||||||||||| |||||    
T  25536720 caaggtttcaaaaaaaggaccggtacc---gggattgcggccgttacaaaacggta 25536772  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 370 - 427
Target Start/End: Complemental strand, 2643741 - 2643687
Alignment:
Q  370 caaggtttcaaaaaacggaccggtaccggggggattacggccgttacaaatcggtatc 427  Q
    ||||||||||||||| |||||||||||   |||||| ||||||||||||| |||||||    
T  2643741 caaggtttcaaaaaaaggaccggtacc---gggattgcggccgttacaaaacggtatc 2643687  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 370 - 398
Target Start/End: Original strand, 11015984 - 11016012
Alignment:
Q  370 caaggtttcaaaaaacggaccggtaccgg 398  Q
    |||||||||||||||||||||||||||||    
T  11015984 caaggtttcaaaaaacggaccggtaccgg 11016012  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 369 - 427
Target Start/End: Original strand, 35754007 - 35754062
Alignment:
Q  369 acaaggtttcaaaaaacggaccggtaccggggggattacggccgttacaaatcggtatc 427  Q
    |||||||||||||||| ||||| |||||   |||||| ||||||||||||| |||||||    
T  35754007 acaaggtttcaaaaaaaggacccgtacc---gggattgcggccgttacaaaacggtatc 35754062  T

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