View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3237_high_3 (Length: 737)

Name: NF3237_high_3
Description: NF3237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3237_high_3
NF3237_high_3
[»] chr8 (11 HSPs)
chr8 (212-719)||(6074400-6074913)
chr8 (298-683)||(6196943-6197328)
chr8 (1-56)||(13884508-13884563)
chr8 (1-56)||(13884761-13884816)
chr8 (1-56)||(2554123-2554178)
chr8 (1-56)||(29714561-29714616)
chr8 (1-56)||(29714815-29714870)
chr8 (1-56)||(42126657-42126712)
chr8 (2-56)||(26746012-26746066)
chr8 (1-87)||(11867955-11868041)
chr8 (2-56)||(26745282-26745336)
[»] chr5 (1 HSPs)
chr5 (316-684)||(37450015-37450383)
[»] chr3 (6 HSPs)
chr3 (1-56)||(40364230-40364285)
chr3 (1-57)||(40244643-40244699)
chr3 (1-56)||(46003521-46003576)
chr3 (1-56)||(51663523-51663578)
chr3 (1-52)||(46003271-46003322)
chr3 (13-56)||(40244873-40244916)
[»] chr7 (11 HSPs)
chr7 (1-71)||(47373735-47373805)
chr7 (1-56)||(28715915-28715970)
chr7 (1-56)||(30862237-30862292)
chr7 (2-56)||(38408174-38408228)
chr7 (10-57)||(6474562-6474609)
chr7 (1-56)||(28715661-28715716)
chr7 (7-56)||(41985929-41985978)
chr7 (9-57)||(6474298-6474346)
chr7 (3-54)||(41986183-41986234)
chr7 (2-56)||(6271241-6271295)
chr7 (2-56)||(38407451-38407505)
[»] scaffold0781 (1 HSPs)
scaffold0781 (1-56)||(5308-5363)
[»] chr6 (9 HSPs)
chr6 (1-56)||(2216851-2216906)
chr6 (1-57)||(24690619-24690675)
chr6 (1-56)||(24798644-24798699)
chr6 (2-56)||(9955643-9955697)
chr6 (1-53)||(24690377-24690429)
chr6 (2-56)||(9954826-9954880)
chr6 (1-56)||(11644020-11644076)
chr6 (3-74)||(18494734-18494805)
chr6 (1-56)||(11643768-11643823)
[»] chr4 (9 HSPs)
chr4 (1-56)||(55173526-55173581)
chr4 (1-54)||(39161560-39161613)
chr4 (1-57)||(50509401-50509457)
chr4 (2-56)||(9738137-9738191)
chr4 (2-56)||(9738956-9739010)
chr4 (1-74)||(47096800-47096873)
chr4 (1-57)||(39161306-39161362)
chr4 (1-53)||(47097070-47097122)
chr4 (6-54)||(55173355-55173403)
[»] chr1 (9 HSPs)
chr1 (1-54)||(37189388-37189441)
chr1 (1-56)||(10824642-10824697)
chr1 (1-56)||(19056424-19056479)
chr1 (1-56)||(37189621-37189676)
chr1 (1-56)||(18844478-18844533)
chr1 (1-75)||(19056149-19056224)
chr1 (1-52)||(22683164-22683215)
chr1 (1-53)||(15825794-15825844)
chr1 (1-57)||(18844721-18844778)
[»] chr2 (15 HSPs)
chr2 (7-74)||(16973343-16973411)
chr2 (1-56)||(13559574-13559629)
chr2 (1-56)||(40987676-40987731)
chr2 (1-50)||(24126196-24126245)
chr2 (1-53)||(2916400-2916452)
chr2 (2-54)||(2916651-2916703)
chr2 (1-56)||(16973083-16973138)
chr2 (1-56)||(38982830-38982885)
chr2 (1-50)||(24125926-24125975)
chr2 (1-53)||(11533718-11533770)
chr2 (8-56)||(24125689-24125737)
chr2 (1-57)||(38982575-38982631)
chr2 (1-56)||(44594267-44594323)
chr2 (1-52)||(44594511-44594562)
chr2 (2-56)||(34826709-34826763)
[»] scaffold0060 (1 HSPs)
scaffold0060 (1-56)||(22978-23033)


Alignment Details
Target: chr8 (Bit Score: 455; Significance: 0; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 212 - 719
Target Start/End: Complemental strand, 6074913 - 6074400
Alignment:
Q  212 ccaactctaagcgggcagctgataaaagaaagtcatat------gtttgttttgttcatactcaatcataatttctaatcaaggtacgtataatgtctta 305  Q
    ||||||| ||||||||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  6074913 ccaactccaagcgggcagctgataaaagaaagtcatattcatatgtttgttttgttcatactcaatcataatttctaatcaaggtacgtaaaatgtctta 6074814  T
Q  306 ttccagcaagaagtacgatgtgtttgtcagctttagaggcgaggacactcggtatggcatcaccaaccttatttacgatgctctgattcataaatcaata 405  Q
    |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6074813 ttccagcaagaaatacgatgtctttgtcagctttagaggcgaggacactcggtatggcatcaccaaccttatttacgatgctctgattcataaatcaata 6074714  T
Q  406 aaaacattcatagattacgagctcaatagaggagaagatgtttggccaaaacttgccgaagctattgaagagtcacacatctccgtcgttgttttctctg 505  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||    
T  6074713 aaaacattcatagattacgagctcaatagaggagaagatgtttggccaaaactttccaaagctattgaagagtcacacatctccgtcgttgttttctctg 6074614  T
Q  506 aaaattttgcaacctcaaaatggtgtttggaagaactggtgaaagtgctgaaatgcagaaaagaccatggtcaagttgttatacctgttttctataaaac 605  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  6074613 aaaattttgcaacctcaaaatggtgtttggaagaactggtgaaagtgctggaatgcagaaaagaccatggtcaagttgttatacctgttttctataaaac 6074514  T
Q  606 aaatccgtctcacataaaaaatcagactcacagttatgagaaagcatttgcaaaacacgagagagatcttgggaccaaaagtaatgcatccaataaactt 705  Q
    ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6074513 aaatccgtctcacataagaaatcagactcatagttatgagaaagcatttgcaaaacacgagagagatcttgggaccaaaagtaatgcatccaataaactt 6074414  T
Q  706 atagtgcttaagtg 719  Q
    ||||||||||||||    
T  6074413 atagtgcttaagtg 6074400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 170; E-Value: 8e-91
Query Start/End: Original strand, 298 - 683
Target Start/End: Complemental strand, 6197328 - 6196943
Alignment:
Q  298 atgtcttattccagcaagaagtacgatgtgtttgtcagctttagaggcgaggacactcggtatggcatcaccaaccttatttacgatgctctgattcata 397  Q
    ||||| ||||| ||||||||| ||||||||||| | ||||||||||||||||||||||| || || ||||| | || | || ||| ||||||||||||||    
T  6197328 atgtcatattctagcaagaagcacgatgtgtttcttagctttagaggcgaggacactcgctacggtatcactagccatcttcacgctgctctgattcata 6197229  T
Q  398 aatcaataaaaacattcatagattacgagctcaatagaggagaagatgtttggccaaaacttgccgaagctattgaagagtcacacatctccgtcgttgt 497  Q
    ||||||| ||||||| | | |||  |  |||  | |||||||||||| |||||||||  |||||| |||| ||||| || |||||  | ||| |||||||    
T  6197228 aatcaatcaaaacatacgtggatagcctgcttgaaagaggagaagatatttggccaactcttgccaaagcaattgaggaatcacatgtttccatcgttgt 6197129  T
Q  498 tttctctgaaaattttgcaacctcaaaatggtgtttggaagaactggtgaaagtgctgaaatgcagaaaagaccatggtcaagttgttatacctgttttc 597  Q
    |||||||||||||||||| ||||||| ||||||||||||||||||||| ||||| ||| |||||||||||| | | ||||||||||||||||||||||||    
T  6197128 tttctctgaaaattttgctacctcaacatggtgtttggaagaactggtcaaagtactggaatgcagaaaagtcaaaggtcaagttgttatacctgttttc 6197029  T
Q  598 tataaaacaaatccgtctcacataaaaaatcagactcacagttatgagaaagcatttgcaaaacacgagagagatcttgggaccaa 683  Q
    ||||||||| |||| ||| |||||| ||||||||||  |||||||||||| ||||| |||||||| ||| ||||||||||||||||    
T  6197028 tataaaacagatccatctgacataagaaatcagactggcagttatgagaatgcattcgcaaaacatgagcgagatcttgggaccaa 6196943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 13884563 - 13884508
Alignment:
Q  1 attggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaaggga 56  Q
    |||||||||||||||||||||| |||||| |||| |||||||||||||||||||||    
T  13884563 attggtacaaattatagttaggggaccaaattgagacaatcaattaagttaaggga 13884508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 13884761 - 13884816
Alignment:
Q  1 attggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaaggga 56  Q
    |||||||||||||||||||||| ||| || |||| |||||||||||||||||||||    
T  13884761 attggtacaaattatagttaggggactaaattgagacaatcaattaagttaaggga 13884816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 2554123 - 2554178
Alignment:
Q  1 attggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaaggga 56  Q
    ||||| |||||||||||||||| || ||| |||| |||||||||||||||||||||    
T  2554123 attggaacaaattatagttaggggatcaaattgagacaatcaattaagttaaggga 2554178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 29714616 - 29714561
Alignment:
Q  1 attggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaaggga 56  Q
    ||||||||||| ||||||| || |||||| |||| |||||||||||||||||||||    
T  29714616 attggtacaaactatagtttggggaccaaattgagacaatcaattaagttaaggga 29714561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 29714815 - 29714870
Alignment:
Q  1 attggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaaggga 56  Q
    |||| ||||||||||||||| | |||||| || |||||||||||||||||||||||    
T  29714815 attgatacaaattatagttaagggaccaaattaaaacaatcaattaagttaaggga 29714870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 42126657 - 42126712
Alignment:
Q  1 attggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaaggga 56  Q
    |||||||||||||||||||||| || ||| |||| | |||||||||||||||||||    
T  42126657 attggtacaaattatagttaggggatcaaattgagataatcaattaagttaaggga 42126712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 56
Target Start/End: Original strand, 26746012 - 26746066
Alignment:
Q  2 ttggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaaggga 56  Q
    ||||||||||||||| ||||| ||||||||||| |||| ||| ||||||||||||    
T  26746012 ttggtacaaattatatttaggggaccaatttgatacaaacaaataagttaaggga 26746066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 11867955 - 11868041
Alignment:
Q  1 attggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaagggatatgtgattaaataagccataaataaataaa 87  Q
    |||| ||||||||||||||| |  ||||| |||| |||||||||||||||||||   | |||||| ||||||||  |||| ||||||    
T  11867955 attgatacaaattatagttaaggaaccaaattgagacaatcaattaagttaaggaccaggtgattgaataagcctaaaattaataaa 11868041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 56
Target Start/End: Complemental strand, 26745336 - 26745282
Alignment:
Q  2 ttggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaaggga 56  Q
    ||||||||||||||| ||||| |||||||||   |||| ||||||||||||||||    
T  26745336 ttggtacaaattatatttaggggaccaatttagtacaaacaattaagttaaggga 26745282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 161; Significance: 2e-85; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 316 - 684
Target Start/End: Original strand, 37450015 - 37450383
Alignment:
Q  316 aagtacgatgtgtttgtcagctttagaggcgaggacactcggtatggcatcaccaaccttatttacgatgctctgattcataaatcaataaaaacattca 415  Q
    ||||||||||||||  ||||||||||||||||||||||| | |  || |||||  ||| | |||| ||||||||||||||||||||||||||||||| ||    
T  37450015 aagtacgatgtgttcatcagctttagaggcgaggacactagattcggtatcacagaccatctttatgatgctctgattcataaatcaataaaaacataca 37450114  T
Q  416 tagattacgagctcaatagaggagaagatgtttggccaaaacttgccgaagctattgaagagtcacacatctccgtcgttgttttctctgaaaattttgc 515  Q
    |||||||| |||||||||||||||||||||||||||||  |||| || |||| ||||| || ||| |||||||| || ||||||||||||||||||||||    
T  37450115 tagattaccagctcaatagaggagaagatgtttggccagcactttccaaagcaattgaggactcatacatctccatcattgttttctctgaaaattttgc 37450214  T
Q  516 aacctcaaaatggtgtttggaagaactggtgaaagtgctgaaatgcagaaaagaccatggtcaagttgttatacctgttttctataaaacaaatccgtct 615  Q
     || ||||||||||||||||||||||| || ||||||||  |||| |||||||| ||||||||| |||||||||||||||| |||||| || |||| |||    
T  37450215 tacatcaaaatggtgtttggaagaactcgtcaaagtgctcgaatgtagaaaagatcatggtcaaattgttatacctgttttttataaagcagatccttct 37450314  T
Q  616 cacataaaaaatcagactcacagttatgagaaagcatttgcaaaacacgagagagatcttgggaccaaa 684  Q
    ||||||| ||| ||||    |||||||||||  ||||| || ||||| ||| | || || |||||||||    
T  37450315 cacataagaaaccagaaagccagttatgagactgcattcgcgaaacatgagcgtgagctcgggaccaaa 37450383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 2e-20; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 40364230 - 40364285
Alignment:
Q  1 attggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaaggga 56  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  40364230 attggtacaaattatagttaggagaccaaattgaaacaatcaattaagttaaggga 40364285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 40244699 - 40244643
Alignment:
Q  1 attggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaagggat 57  Q
    |||||||||||||||||||| | |||||| |||| ||||||||||||||||||||||    
T  40244699 attggtacaaattatagttaagggaccaaattgagacaatcaattaagttaagggat 40244643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 46003521 - 46003576
Alignment:
Q  1 attggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaaggga 56  Q
    ||||||||||||| |||||||| |||||| |||| |||||||||||||||||||||    
T  46003521 attggtacaaattttagttaggggaccaaattgagacaatcaattaagttaaggga 46003576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 51663523 - 51663578
Alignment:
Q  1 attggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaaggga 56  Q
    |||| ||||||||||||||||| |||||| |||| |||||||||||||||||||||    
T  51663523 attgctacaaattatagttaggggaccaaattgagacaatcaattaagttaaggga 51663578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 46003322 - 46003271
Alignment:
Q  1 attggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaa 52  Q
    |||| ||||||||||||||||| |||||| || |||||||||||||||||||    
T  46003322 attgatacaaattatagttaggggaccaaattaaaacaatcaattaagttaa 46003271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 56
Target Start/End: Original strand, 40244873 - 40244916
Alignment:
Q  13 tatagttaggagaccaatttgaaacaatcaattaagttaaggga 56  Q
    |||||||||| |||||| |||| |||||||||||||||||||||    
T  40244873 tatagttaggggaccaaattgagacaatcaattaagttaaggga 40244916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 2e-17; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 47373735 - 47373805
Alignment:
Q  1 attggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaagggatatgtgattaaataa 71  Q
    |||||||||||||||| ||||| |||||| |||| |||||||||||||||||||||  |||||||||||||    
T  47373735 attggtacaaattataattaggggaccaaattgagacaatcaattaagttaagggacctgtgattaaataa 47373805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 28715915 - 28715970
Alignment:
Q  1 attggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaaggga 56  Q
    |||||||||||||||||||||| |||||| || | |||||||||||||||||||||    
T  28715915 attggtacaaattatagttaggggaccaaattaagacaatcaattaagttaaggga 28715970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 30862292 - 30862237
Alignment:
Q  1 attggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaaggga 56  Q
    |||||||||||||||||||||| |||||| || | |||||||||||||||||||||    
T  30862292 attggtacaaattatagttaggggaccaaattcagacaatcaattaagttaaggga 30862237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 56
Target Start/End: Original strand, 38408174 - 38408228
Alignment:
Q  2 ttggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaaggga 56  Q
    ||||||||||||||| ||||| ||||||||||| |||| ||||||||||||||||    
T  38408174 ttggtacaaattatatttaggggaccaatttgatacaaacaattaagttaaggga 38408228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 10 - 57
Target Start/End: Original strand, 6474562 - 6474609
Alignment:
Q  10 aattatagttaggagaccaatttgaaacaatcaattaagttaagggat 57  Q
    |||||||||||||||||||| || | ||||||||||||||||||||||    
T  6474562 aattatagttaggagaccaaattaagacaatcaattaagttaagggat 6474609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 28715716 - 28715661
Alignment:
Q  1 attggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaaggga 56  Q
    |||| |||||||||||||||||| ||||| || ||||||| |||||||||||||||    
T  28715716 attgatacaaattatagttaggaaaccaaattaaaacaattaattaagttaaggga 28715661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 41985978 - 41985929
Alignment:
Q  7 acaaattatagttaggagaccaatttgaaacaatcaattaagttaaggga 56  Q
    |||||||||||||||| || ||| |||| |||||||||||||||||||||    
T  41985978 acaaattatagttaggggatcaaattgagacaatcaattaagttaaggga 41985929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 9 - 57
Target Start/End: Complemental strand, 6474346 - 6474298
Alignment:
Q  9 aaattatagttaggagaccaatttgaaacaatcaattaagttaagggat 57  Q
    |||||||||||||| || ||| |||| ||||||||||||||||||||||    
T  6474346 aaattatagttaggggatcaaattgagacaatcaattaagttaagggat 6474298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 54
Target Start/End: Original strand, 41986183 - 41986234
Alignment:
Q  3 tggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaagg 54  Q
    |||||||||||||||||||| || ||| |||| |||| ||||||||||||||    
T  41986183 tggtacaaattatagttaggggatcaaattgagacaaacaattaagttaagg 41986234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 56
Target Start/End: Original strand, 6271241 - 6271295
Alignment:
Q  2 ttggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaaggga 56  Q
    ||||||||||||||| ||||| ||||||||||  | || ||||||||||||||||    
T  6271241 ttggtacaaattatatttaggggaccaatttggtagaaacaattaagttaaggga 6271295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 56
Target Start/End: Complemental strand, 38407505 - 38407451
Alignment:
Q  2 ttggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaaggga 56  Q
    ||||||||||||||| ||||| ||||||||||  |||| | ||||||||||||||    
T  38407505 ttggtacaaattatatttaggggaccaatttggtacaaaccattaagttaaggga 38407451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0781 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0781
Description:

Target: scaffold0781; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 5308 - 5363
Alignment:
Q  1 attggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaaggga 56  Q
    |||||||||||||||||||||| |||||| |||| |||||||||||||||||||||    
T  5308 attggtacaaattatagttaggggaccaaattgagacaatcaattaagttaaggga 5363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 2216851 - 2216906
Alignment:
Q  1 attggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaaggga 56  Q
    |||||||||||||||||||||| |||||| |||| |||||||||||||||||||||    
T  2216851 attggtacaaattatagttaggggaccaaattgagacaatcaattaagttaaggga 2216906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 24690619 - 24690675
Alignment:
Q  1 attggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaagggat 57  Q
    ||||||||||||||||||||||  ||||| || ||||||||||||||||||||||||    
T  24690619 attggtacaaattatagttagggaaccaaattaaaacaatcaattaagttaagggat 24690675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 24798699 - 24798644
Alignment:
Q  1 attggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaaggga 56  Q
    |||||||||||||||||| ||| |||||| ||||||||| ||||||||||||||||    
T  24798699 attggtacaaattatagtcaggggaccaaattgaaacaaccaattaagttaaggga 24798644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 56
Target Start/End: Original strand, 9955643 - 9955697
Alignment:
Q  2 ttggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaaggga 56  Q
    ||||||||||||||| ||||| ||||||||||| |||| ||||||||||||||||    
T  9955643 ttggtacaaattatatttaggggaccaatttgatacaaacaattaagttaaggga 9955697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 24690429 - 24690377
Alignment:
Q  1 attggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaag 53  Q
    |||||||||||||||||| ||| |||||| |||| ||||||||||||||||||    
T  24690429 attggtacaaattatagtaaggggaccaaattgagacaatcaattaagttaag 24690377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 56
Target Start/End: Complemental strand, 9954880 - 9954826
Alignment:
Q  2 ttggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaaggga 56  Q
    ||||||||||||||| ||||| ||||||||||  |||| ||||||||||||||||    
T  9954880 ttggtacaaattatatttaggggaccaatttggtacaaacaattaagttaaggga 9954826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 11644020 - 11644076
Alignment:
Q  1 attggtacaaattatagttaggag-accaatttgaaacaatcaattaagttaaggga 56  Q
    |||| ||||||||||||||||| | ||||| |||| |||||||||||||||||||||    
T  11644020 attgatacaaattatagttagggggaccaaattgagacaatcaattaagttaaggga 11644076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 3 - 74
Target Start/End: Complemental strand, 18494805 - 18494734
Alignment:
Q  3 tggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaaggga-tatgtgattaaataagcc 74  Q
    ||||||||||||||| |||| |||||| |||| ||||||||| |||||||||||  |||||||| ||||||||    
T  18494805 tggtacaaattatagctagg-gaccaaattgagacaatcaataaagttaagggaccatgtgattgaataagcc 18494734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 11643823 - 11643768
Alignment:
Q  1 attggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaaggga 56  Q
    |||| ||||||||||||||||| || ||| |||| |||||||||||| ||||||||    
T  11643823 attgatacaaattatagttaggggatcaaattgagacaatcaattaaattaaggga 11643768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 55173526 - 55173581
Alignment:
Q  1 attggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaaggga 56  Q
    ||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||    
T  55173526 attggtacaaattatagttaggagatcaaattgagacaatcaattaagttaaggga 55173581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 39161560 - 39161613
Alignment:
Q  1 attggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaagg 54  Q
    |||||||||||||||||||||| |||||| || |||||||||||||||||||||    
T  39161560 attggtacaaattatagttaggggaccaaattaaaacaatcaattaagttaagg 39161613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 50509401 - 50509457
Alignment:
Q  1 attggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaagggat 57  Q
    |||||||||||||||||||||| |||||| || | ||||||||||||||||||||||    
T  50509401 attggtacaaattatagttaggggaccaaattaagacaatcaattaagttaagggat 50509457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 56
Target Start/End: Complemental strand, 9738191 - 9738137
Alignment:
Q  2 ttggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaaggga 56  Q
    ||||||||||||||| ||||| ||||||||||  |||| ||||||||||||||||    
T  9738191 ttggtacaaattatatttaggggaccaatttggtacaaacaattaagttaaggga 9738137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 56
Target Start/End: Original strand, 9738956 - 9739010
Alignment:
Q  2 ttggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaaggga 56  Q
    ||||||||||||||| ||||| ||||||||||| |||| |||| |||||||||||    
T  9738956 ttggtacaaattatatttaggggaccaatttgatacaaacaatcaagttaaggga 9739010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 47096873 - 47096800
Alignment:
Q  1 attggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaagggat-atgtgattaaataagcc 74  Q
    ||||||||||||||| |||||| |||||| |||| | |||||||||||||||||||| | |||||| ||||||||    
T  47096873 attggtacaaattat-gttaggggaccaaattgagataatcaattaagttaagggatcaggtgattgaataagcc 47096800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 39161362 - 39161306
Alignment:
Q  1 attggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaagggat 57  Q
    |||||||||||||||||||||| |||||| || | ||| ||||||||||||| ||||    
T  39161362 attggtacaaattatagttaggggaccaaattaagacattcaattaagttaaaggat 39161306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 47097070 - 47097122
Alignment:
Q  1 attggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaag 53  Q
    |||||||||||||||||||||  ||| || |||| ||||||||||||||||||    
T  47097070 attggtacaaattatagttagaggactaaattgagacaatcaattaagttaag 47097122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 6 - 54
Target Start/End: Complemental strand, 55173403 - 55173355
Alignment:
Q  6 tacaaattatagttaggagaccaatttgaaacaatcaattaagttaagg 54  Q
    ||||||||||||||||| |||||| || | |||||||||||||||||||    
T  55173403 tacaaattatagttaggggaccaaattaagacaatcaattaagttaagg 55173355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 37189441 - 37189388
Alignment:
Q  1 attggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaagg 54  Q
    |||||||||||||||||||| |||||||| |||| |||||||||||||||||||    
T  37189441 attggtacaaattatagttatgagaccaaattgagacaatcaattaagttaagg 37189388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 10824642 - 10824697
Alignment:
Q  1 attggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaaggga 56  Q
    |||| ||||||||||||||||| |||||| |||| |||||||||||||||||||||    
T  10824642 attgatacaaattatagttaggggaccaaattgagacaatcaattaagttaaggga 10824697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 19056424 - 19056479
Alignment:
Q  1 attggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaaggga 56  Q
    ||||||||| |||||||||||| |||||| || |||||||||||||||||||||||    
T  19056424 attggtacagattatagttaggggaccaaattaaaacaatcaattaagttaaggga 19056479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 37189621 - 37189676
Alignment:
Q  1 attggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaaggga 56  Q
    ||||||||||||||||| |||| |||||| |||| |||||||||||||||||||||    
T  37189621 attggtacaaattatagataggggaccaaattgagacaatcaattaagttaaggga 37189676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 18844533 - 18844478
Alignment:
Q  1 attggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaaggga 56  Q
    |||| ||||||||||||||||| |||||| |||| | |||||||||||||||||||    
T  18844533 attgatacaaattatagttaggggaccaaattgagataatcaattaagttaaggga 18844478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 19056224 - 19056149
Alignment:
Q  1 attggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaagggat-atgtgattaaataagcca 75  Q
    |||| ||||||||||| ||||| |||||| || | |||||||||||||||||||||| | |||||| |||||||||    
T  19056224 attgatacaaattataattaggggaccaaattaatacaatcaattaagttaagggatcaggtgattgaataagcca 19056149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 22683215 - 22683164
Alignment:
Q  1 attggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaa 52  Q
    |||| ||||||||||||||||| |||||| |||| |||||||||||||||||    
T  22683215 attgatacaaattatagttaggggaccaaattgagacaatcaattaagttaa 22683164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 15825794 - 15825844
Alignment:
Q  1 attggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaag 53  Q
    |||||||||||||||||||||  |||||| |||| ||||||||||||||||||    
T  15825794 attggtacaaattatagttag--gaccaaattgagacaatcaattaagttaag 15825844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 18844721 - 18844778
Alignment:
Q  1 attggtacaaattatagttagg-agaccaatttgaaacaatcaattaagttaagggat 57  Q
    |||| ||||||||||||||||| | ||||| |||| ||||||||||||||||||||||    
T  18844721 attgatacaaattatagttagggacaccaaattgagacaatcaattaagttaagggat 18844778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 7 - 74
Target Start/End: Original strand, 16973343 - 16973411
Alignment:
Q  7 acaaattatagttaggagaccaatttgaaacaatcaattaagttaaggga-tatgtgattaaataagcc 74  Q
    |||||||||||||||| |||||| |||| |||||||||||||||||||||  |||||||| ||||||||    
T  16973343 acaaattatagttaggggaccaaattgagacaatcaattaagttaagggaccatgtgattgaataagcc 16973411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 13559574 - 13559629
Alignment:
Q  1 attggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaaggga 56  Q
    |||| |||||||||||||||||  ||||| ||||||||||||||||||||||||||    
T  13559574 attgatacaaattatagttagggaaccaaattgaaacaatcaattaagttaaggga 13559629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 40987731 - 40987676
Alignment:
Q  1 attggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaaggga 56  Q
    ||||||||||||||||||||||  ||||| |||| |||||||||||||||||||||    
T  40987731 attggtacaaattatagttagggaaccaaattgagacaatcaattaagttaaggga 40987676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 24126196 - 24126245
Alignment:
Q  1 attggtacaaattatagttaggagaccaatttgaaacaatcaattaagtt 50  Q
    ||||||||||||||||||||||||||||| |||| | |||||||||||||    
T  24126196 attggtacaaattatagttaggagaccaaattgagaaaatcaattaagtt 24126245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 2916452 - 2916400
Alignment:
Q  1 attggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaag 53  Q
    |||||||||||||||||||||| || ||| |||| ||||||||||||||||||    
T  2916452 attggtacaaattatagttaggggatcaaattgagacaatcaattaagttaag 2916400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 2916651 - 2916703
Alignment:
Q  2 ttggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaagg 54  Q
    ||||||||||| ||||||||| |||||| |||| |||||||||||||||||||    
T  2916651 ttggtacaaataatagttaggggaccaaattgagacaatcaattaagttaagg 2916703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 16973138 - 16973083
Alignment:
Q  1 attggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaaggga 56  Q
    ||||||||||| |||||||||| |||||| || | |||||||||||||||||||||    
T  16973138 attggtacaaactatagttaggggaccaaattaagacaatcaattaagttaaggga 16973083  T

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Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 38982830 - 38982885
Alignment:
Q  1 attggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaaggga 56  Q
    |||| ||||||||||||||| | |||||| |||| |||||||||||||||||||||    
T  38982830 attgatacaaattatagttaagggaccaaattgagacaatcaattaagttaaggga 38982885  T

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Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 24125926 - 24125975
Alignment:
Q  1 attggtacaaattatagttaggagaccaatttgaaacaatcaattaagtt 50  Q
    ||||||||||||||||||||||||||||| |||| | ||| |||||||||    
T  24125926 attggtacaaattatagttaggagaccaaattgagaaaattaattaagtt 24125975  T

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Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 11533718 - 11533770
Alignment:
Q  1 attggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaag 53  Q
    ||||||||||||||||||| || |||||| |||| ||||||| ||||||||||    
T  11533718 attggtacaaattatagttgggggaccaaattgagacaatcacttaagttaag 11533770  T

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Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 24125737 - 24125689
Alignment:
Q  8 caaattatagttaggagaccaatttgaaacaatcaattaagttaaggga 56  Q
    ||||||||||||||| || ||| |||| |||||||||||||||||||||    
T  24125737 caaattatagttaggggatcaaattgagacaatcaattaagttaaggga 24125689  T

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Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 38982631 - 38982575
Alignment:
Q  1 attggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaagggat 57  Q
    ||||||||||||||||||||||   |||| |||| ||||||||||||||||| ||||    
T  38982631 attggtacaaattatagttagggagccaaattgagacaatcaattaagttaaaggat 38982575  T

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Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 44594323 - 44594267
Alignment:
Q  1 attggtacaaattatagttagg-agaccaatttgaaacaatcaattaagttaaggga 56  Q
    |||| ||||||||||||||||| | ||||| |||| |||||||||||||||||||||    
T  44594323 attgatacaaattatagttagggacaccaaattgagacaatcaattaagttaaggga 44594267  T

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Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 44594511 - 44594562
Alignment:
Q  1 attggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaa 52  Q
    |||| ||||||||||||||||| |||||| |||| |||||||||||| ||||    
T  44594511 attgatacaaattatagttaggggaccaaattgagacaatcaattaaattaa 44594562  T

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Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 56
Target Start/End: Original strand, 34826709 - 34826763
Alignment:
Q  2 ttggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaaggga 56  Q
    ||||||||||||| | ||| | ||||||||||| |||| ||||||||||||||||    
T  34826709 ttggtacaaattaaatttacgggaccaatttgatacaaacaattaagttaaggga 34826763  T

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Target: scaffold0060 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 22978 - 23033
Alignment:
Q  1 attggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaaggga 56  Q
    |||||||||||||||||||||| |||||| || | |||||||||||||||||||||    
T  22978 attggtacaaattatagttaggggaccaaattaagacaatcaattaagttaaggga 23033  T

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