View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3237_high_30 (Length: 471)
Name: NF3237_high_30
Description: NF3237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3237_high_30 |
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Alignment Details
Target: chr4 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 20 - 466
Target Start/End: Complemental strand, 45285954 - 45285507
Alignment:
| Q |
20 |
tataagctgtggtaacaaagatccaaaccagcttatgttacagggccacagtcatcattcagccatcatggtctatcccattcatgatttttctcaaaca |
119 |
Q |
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| T |
45285954 |
tataagctgtggtaacaaagatccagaccagcttatgttacagggccacagtcatcattcagccatcatggtctatcccattcatgatttttctcaaaca |
45285855 |
T |
|
| Q |
120 |
tttaccgtcttcatataagatacacatatacattgcagtacaaagtagacaaccggtgttcctattgctagatactatcaaatattgcaacaataccaaa |
219 |
Q |
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| T |
45285854 |
tttaccgtcttcatataatatacacatatacattgcagtacaaagtagacaaccggtgttcctattgctagatactatcaaatattgcaacaataccaaa |
45285755 |
T |
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| Q |
220 |
actaattgcaattgacaactaacaactcacatatattagtcacactaaataatagagtacaaaatagcagtacaaa-ttttacaactttatattgagaac |
318 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
45285754 |
actaattgcaattgacaagtaacaactcacatatattagtcacactaaataataaagtacaaaatagcagtacaaacttttacaactttatattgagaac |
45285655 |
T |
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| Q |
319 |
tttacttaatggctggtacatacttggtgttccatatgatgttgaaggggtaaatggtttaggcgtagattcctcccgaagcgcggttagagcagccttc |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45285654 |
tttacttaatggctggtacatacttggtgttccatatgatgttgaaggggtaaatggtttaggcgtagattcctcccgaagcgcggttagagcagccttc |
45285555 |
T |
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| Q |
419 |
tttctcagcctatgttcgcggtgtctccttattttgtcctcctatgct |
466 |
Q |
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| T |
45285554 |
tttctcagcctatgttcgcggtgtctccttattttgtcctccaatgct |
45285507 |
T |
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