View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3237_high_32 (Length: 467)

Name: NF3237_high_32
Description: NF3237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3237_high_32
NF3237_high_32
[»] chr8 (5 HSPs)
chr8 (1-467)||(8714727-8715197)
chr8 (290-320)||(26172729-26172759)
chr8 (293-338)||(19165557-19165602)
chr8 (391-467)||(39434573-39434650)
chr8 (292-320)||(7596376-7596404)
[»] chr7 (3 HSPs)
chr7 (380-467)||(32584495-32584583)
chr7 (391-467)||(45003021-45003098)
chr7 (290-330)||(33677538-33677578)
[»] chr5 (2 HSPs)
chr5 (292-350)||(28094136-28094194)
chr5 (380-467)||(35310343-35310431)
[»] chr4 (1 HSPs)
chr4 (293-338)||(14949665-14949710)
[»] chr1 (3 HSPs)
chr1 (391-444)||(2898608-2898661)
chr1 (391-437)||(2764385-2764431)
chr1 (290-322)||(15242565-15242597)
[»] chr3 (3 HSPs)
chr3 (290-338)||(35696473-35696521)
chr3 (380-437)||(38978954-38979011)
chr3 (290-322)||(10877098-10877130)
[»] chr6 (3 HSPs)
chr6 (396-440)||(20767386-20767430)
chr6 (305-341)||(27755483-27755519)
chr6 (290-334)||(32214324-32214368)


Alignment Details
Target: chr8 (Bit Score: 339; Significance: 0; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 467
Target Start/End: Complemental strand, 8715197 - 8714727
Alignment:
Q  1 cacaatcatggcagaacattaaccagcgtcagtacgaaaaaaccaaacatcatcggtttggaacaaacatatgggtcagaaatctcactagacgcaaaat 100  Q
    |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  8715197 cacaatcatggcggaacataaaccagcgtcagtacgaaaaaaccaaacatcatcggtctggaacaaacatatgggtcagaaatctcactagacccaaaat 8715098  T
Q  101 ctagatcgagttgcaaagctagaaccaaaacaaaaaggcaagccgtgggaaataatatactccacaaagggagtcttttcaaaccgtnnnnnnnnnnnnn 200  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||                 
T  8715097 ctagatcgagttgcaaagctagaaccaaaacaaaaagccaagccgtgggaaataatatactccacaaagggagtcttttcaaaccgtaaaaaagaaacta 8714998  T
Q  201 nnnnnnnnnnnnttcttcctctttttctcaagagtccatatatgtcatcaaacctcttctttctttcttt----tttcattgatatttatagtaccaagt 296  Q
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||| |||||||    
T  8714997 aaaatgccaaaattcttcctctttttctcaagagtccatatatgtcatcaaacctcttctttctttctttcttttttcattgatatttatagaaccaagt 8714898  T
Q  297 aattgagttcaagtggttaatgagctctaccaaaagacgaattgtgtatgagaagattcatgtatgaaataattttttgtcagcaagttgcgttgctaaa 396  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||     
T  8714897 aattgagttcaagtggttaataagctctaccaaaagacgaattgtgtatgagaagattcatgtatgaaataattttttgtcagcaagctgcgttgctaac 8714798  T
Q  397 cctttttagatggtaaaatcaattttcttaaacacaacattcatgatctatgagccataactttgatatgc 467  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  8714797 cctttttagatggtaaaatcaattttcttaaacacaacattcatgatctatgagccataacattgatatgc 8714727  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 290 - 320
Target Start/End: Original strand, 26172729 - 26172759
Alignment:
Q  290 accaagtaattgagttcaagtggttaatgag 320  Q
    |||||||||||||||||||||||||||||||    
T  26172729 accaagtaattgagttcaagtggttaatgag 26172759  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 338
Target Start/End: Complemental strand, 19165602 - 19165557
Alignment:
Q  293 aagtaattgagttcaagtggttaatgagctctaccaaaagacgaat 338  Q
    |||| |||||||| ||||| ||||||||||| ||||||||||||||    
T  19165602 aagtgattgagtttaagtgattaatgagctccaccaaaagacgaat 19165557  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 467
Target Start/End: Original strand, 39434573 - 39434650
Alignment:
Q  391 gctaaacctttttagatggtaaaatcaattttcttaaacacaacattcat-gatctatgagccataactttgatatgc 467  Q
    |||| |||||||| ||||| |||||||||  || |||||||||||||||| |||||| ||| ||| || |||||||||    
T  39434573 gctagacctttttggatggcaaaatcaatcctcgtaaacacaacattcatggatctaagagacattacattgatatgc 39434650  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 292 - 320
Target Start/End: Complemental strand, 7596404 - 7596376
Alignment:
Q  292 caagtaattgagttcaagtggttaatgag 320  Q
    |||||||||||||||||||||||||||||    
T  7596404 caagtaattgagttcaagtggttaatgag 7596376  T

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Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 380 - 467
Target Start/End: Original strand, 32584495 - 32584583
Alignment:
Q  380 caagttgcgttgctaaacctttttagatggtaaaatcaattttcttaaacacaacattcat-gatctatgagccataactttgatatgc 467  Q
    ||||||||| |||||  ||||||| ||||||||||||||| ||  |||||||||||||||| |||||||||| |||||| |||||||||    
T  32584495 caagttgcgctgctaggcctttttggatggtaaaatcaatctttgtaaacacaacattcatcgatctatgagacataacattgatatgc 32584583  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 391 - 467
Target Start/End: Complemental strand, 45003098 - 45003021
Alignment:
Q  391 gctaaacctttttagatggtaaaatcaattttcttaaacacaacattcatgat-ctatgagccataactttgatatgc 467  Q
    |||| |||||||| ||||| ||||||||| ||| ||||||||||||||||| | ||||||| |||||| ||| |||||    
T  45003098 gctagacctttttggatggcaaaatcaatcttcgtaaacacaacattcatggtcctatgagacataacattgctatgc 45003021  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 290 - 330
Target Start/End: Complemental strand, 33677578 - 33677538
Alignment:
Q  290 accaagtaattgagttcaagtggttaatgagctctaccaaa 330  Q
    |||||||||||| ||||||||||||||||||||| ||||||    
T  33677578 accaagtaattgggttcaagtggttaatgagctccaccaaa 33677538  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 292 - 350
Target Start/End: Original strand, 28094136 - 28094194
Alignment:
Q  292 caagtaattgagttcaagtggttaatgagctctaccaaaagacgaattgtgtatgagaa 350  Q
    |||||||||| | ||||||||||||||||||| |||||| ||||||||||||| |||||    
T  28094136 caagtaattgggctcaagtggttaatgagctccaccaaatgacgaattgtgtaggagaa 28094194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 380 - 467
Target Start/End: Original strand, 35310343 - 35310431
Alignment:
Q  380 caagttgcgttgctaaacctttttagatggtaaaatcaattttcttaaacacaacattcat-gatctatgagccataactttgatatgc 467  Q
    |||| ||||| | ||||||| ||| ||||| |||| ||||| || |||||||||||||||| || ||| ||| |||||| |||||||||    
T  35310343 caagctgcgtcgttaaacctctttggatggcaaaaccaattctcgtaaacacaacattcatggacctaggagacataacattgatatgc 35310431  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 293 - 338
Target Start/End: Complemental strand, 14949710 - 14949665
Alignment:
Q  293 aagtaattgagttcaagtggttaatgagctctaccaaaagacgaat 338  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||    
T  14949710 aagtgattgagttcaagtggttaatgagctctatcaaaagacgaat 14949665  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 391 - 444
Target Start/End: Original strand, 2898608 - 2898661
Alignment:
Q  391 gctaaacctttttagatggtaaaatcaattttcttaaacacaacattcatgatc 444  Q
    ||||| ||||||| ||||| |||||||||  |||||||||||||||||||||||    
T  2898608 gctaagcctttttggatggcaaaatcaatcctcttaaacacaacattcatgatc 2898661  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 391 - 437
Target Start/End: Original strand, 2764385 - 2764431
Alignment:
Q  391 gctaaacctttttagatggtaaaatcaattttcttaaacacaacatt 437  Q
    ||||||||||||| |||||||||||||||  || |||||||||||||    
T  2764385 gctaaacctttttggatggtaaaatcaatcatcgtaaacacaacatt 2764431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 322
Target Start/End: Original strand, 15242565 - 15242597
Alignment:
Q  290 accaagtaattgagttcaagtggttaatgagct 322  Q
    ||||| |||||||||||||||||||||||||||    
T  15242565 accaaataattgagttcaagtggttaatgagct 15242597  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 290 - 338
Target Start/End: Original strand, 35696473 - 35696521
Alignment:
Q  290 accaagtaattgagttcaagtggttaatgagctctaccaaaagacgaat 338  Q
    ||||||| |||| | ||||||||||||||||||| ||||||||||||||    
T  35696473 accaagtgattgggctcaagtggttaatgagctccaccaaaagacgaat 35696521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 437
Target Start/End: Complemental strand, 38979011 - 38978954
Alignment:
Q  380 caagttgcgttgctaaacctttttagatggtaaaatcaattttcttaaacacaacatt 437  Q
    |||||||||||| ||| ||||||| ||||| ||||  ||||||| |||||||||||||    
T  38979011 caagttgcgttgttaagcctttttggatggcaaaactaattttcgtaaacacaacatt 38978954  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 322
Target Start/End: Original strand, 10877098 - 10877130
Alignment:
Q  290 accaagtaattgagttcaagtggttaatgagct 322  Q
    |||||| ||||||||||||||||||||||||||    
T  10877098 accaagcaattgagttcaagtggttaatgagct 10877130  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 396 - 440
Target Start/End: Original strand, 20767386 - 20767430
Alignment:
Q  396 acctttttagatggtaaaatcaattttcttaaacacaacattcat 440  Q
    ||||||||| |||||||||| |||| | |||||||||||||||||    
T  20767386 acctttttaaatggtaaaattaattcttttaaacacaacattcat 20767430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 341
Target Start/End: Complemental strand, 27755519 - 27755483
Alignment:
Q  305 tcaagtggttaatgagctctaccaaaagacgaattgt 341  Q
    ||||||| |||||||| ||||||||||||||||||||    
T  27755519 tcaagtgtttaatgagatctaccaaaagacgaattgt 27755483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 334
Target Start/End: Original strand, 32214324 - 32214368
Alignment:
Q  290 accaagtaattgagttcaagtggttaatgagctctaccaaaagac 334  Q
    ||||||| |||||||| ||||| ||||||| ||||||||||||||    
T  32214324 accaagtgattgagttaaagtgattaatgatctctaccaaaagac 32214368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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