View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3237_high_34 (Length: 446)
Name: NF3237_high_34
Description: NF3237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3237_high_34 |
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Alignment Details
Target: chr1 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 18 - 360
Target Start/End: Complemental strand, 33731683 - 33731340
Alignment:
| Q |
18 |
gaaataatacaaaacagtatgattaagtagtcactagtggaagatatagaaaaaa-ttatctataataacattagacaagtaaaaataattattatnnnn |
116 |
Q |
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| T |
33731683 |
gaaataatacaaaacagtatgattaagtagtcactagtggaagatatagaaaaaaattatctataataacattagacaaataaaaataattattataaaa |
33731584 |
T |
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| Q |
117 |
nnntgcgagttgcaatttcaagaatcttgattagatctgtgatgtggcttagggtggcagtttatggcacatgcatctatatattcataagattcactct |
216 |
Q |
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| T |
33731583 |
aaatgcgagttgcaatttcaagaatcttgattagatctgtgatgtggcttagggtggcagtttatggcacatgcatctatataatcataagattcactct |
33731484 |
T |
|
| Q |
217 |
gtcagtgtaatctcttaagacagtatcaaattttgttgttttctgattcattgcaataaacaaaattgaacgcgaatctcgtggaaatatttggtatatg |
316 |
Q |
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| T |
33731483 |
gtcagtgtaatctcttaagacagtatcaaattttgttgttttctgattcattgcaataaacaaaattgaacgcgaatctcgtggaaatatttggtatatg |
33731384 |
T |
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| Q |
317 |
actacatatattaatgaatcaatttgattcttcacgatgtgtca |
360 |
Q |
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| T |
33731383 |
actacatatattaatgaatcaatttgattcttcacgatgtgtca |
33731340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 383 - 440
Target Start/End: Complemental strand, 33731340 - 33731285
Alignment:
| Q |
383 |
atgacatagtttaaattctctctgcgacgattgtaaaataatcattaatattcttcga |
440 |
Q |
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| T |
33731340 |
atgacatagtt--aattctttatgcgacgattgtaaaataatcattaatattattcga |
33731285 |
T |
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