View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3237_high_48 (Length: 382)
Name: NF3237_high_48
Description: NF3237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3237_high_48 |
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Alignment Details
Target: chr4 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 369
Target Start/End: Complemental strand, 45285536 - 45285168
Alignment:
| Q |
1 |
cggtgtctccttattttgtcctccaatgctgctttaccattctcagctaactcagctctgctgatagcctgttcggcacgagtcctcatctctgaaatct |
100 |
Q |
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| T |
45285536 |
cggtgtctccttattttgtcctccaatgctgctttaccattctcagctaactcagctctgctgatagcctgttcggcacgagtcctcatctctgaaatct |
45285437 |
T |
|
| Q |
101 |
tcaatgatgcattttcaagctcctttttcatcaatgctaactctatctggtttccttttttatttcctttctggacttctttaatcatgtagttgtaatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45285436 |
tcaatgatgcattttcaagctcctttttcatcaatgctaactctatctggtttccttttttatttcctttctggacttctttaatcatgtagttgtaatc |
45285337 |
T |
|
| Q |
201 |
ttccaaagagattgtgatactgtcattgttttcttcagcttcaccctttgagtgatcagtgatatatccatccttataagccaacctatattcttgaaga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45285336 |
ttccaaagagattgtgatactgtcattgttttcttcagcttcaccctttgagtgatcagtgatatatccatccttataagccaacctatattcttgaaga |
45285237 |
T |
|
| Q |
301 |
tgagatttcagcaatgcaatctctacctgtgcatcaatgtctctctcctcattcgtcttcaactcttct |
369 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
45285236 |
tgagatttcagcaatgcaatctctacctgtgcatcaatgtctctctccttattcgtcttcaactcttct |
45285168 |
T |
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