View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3237_high_49 (Length: 381)
Name: NF3237_high_49
Description: NF3237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3237_high_49 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 334
Target Start/End: Original strand, 41067665 - 41067999
Alignment:
| Q |
1 |
ccaatgccactttaataaaaaattattttaaaataatcgtcgttttatatttaagacatacaaaatactaacaatagagacactttaacnnnnnnnnnnn |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
41067665 |
ccaatgccactttaataaaaaaatattttaaaataatcgtcgttttctatttacgacatacaaaatactaacaatagagacactttaacttttttttaca |
41067764 |
T |
|
| Q |
101 |
nnnnn-gactaaagttgaaaaggtatttttaatttaaattcagactatatcgacttatccactaacaaccattcattcttttctcttcttttcccaaaac |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41067765 |
ttttttgactaaagttgaaaaggtatttttaatttaaattcagactatatcgacttatccactaacaaccattcattcttttctcttcttttcccaaaac |
41067864 |
T |
|
| Q |
200 |
taacacatttgttcattttacaaatattaaaaaatctaaatatgtatctatatctatataatatacgattgtgattgatttttcccttcaaataatacaa |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41067865 |
taacacatttgttcattttacaaatattaaaaaatctaaatatgtatctatatctatataatatacgattgtgattgatttttcccttcaaataatacaa |
41067964 |
T |
|
| Q |
300 |
atggctttgctcacaagaactctcgtctctcctct |
334 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
41067965 |
atggctttgctcacaagaactctcgtctctcctct |
41067999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University