View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3237_high_5 (Length: 652)
Name: NF3237_high_5
Description: NF3237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3237_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 453; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 119 - 639
Target Start/End: Original strand, 42038845 - 42039372
Alignment:
| Q |
119 |
cttagtcagtgtgatactgaacatgtaccgattctttgtcacacatcaatcataataatatcatattagtattaatttaacatatagaatgtgattgatt |
218 |
Q |
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| T |
42038845 |
cttagtcactgtgatactgaacatgtaccgattctttgtcacacatcaatcataataatatcatattagtattaatttaacatatagaatgtgattgatt |
42038944 |
T |
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| Q |
219 |
gtgcagcttactttgttgatggctatgatattggcaagttcacaatgaaggttgttgatgatgaaagaacaatcaacaaaagtgttcattttcgaccctc |
318 |
Q |
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| T |
42038945 |
gtgcagcgtactttgttgatggctatgatattggcaagttcacaatgaaggttgttgatgatgaaagaacaatcaacaaaagtgttcattttcgaccctc |
42039044 |
T |
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| Q |
319 |
taccaactgttacagcatgaatgagcttgcttctttgtgggaaaataaaattgctcaaaaaattcctagagcaatcatatctgaagacgatcttctagga |
418 |
Q |
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| T |
42039045 |
taccaactgttacagcatgaatgagcttgcttctttgtgggaaaataaaattgctcgaaaaattcctagagcaatcgtctctgaagacgatcttctagga |
42039144 |
T |
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| Q |
419 |
atagccgcaggttccatcctactcttaatannnnnnnatattctaaagtgacaaataatacgaatcaataaaatatttcataacaaattttgatacaatg |
518 |
Q |
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| T |
42039145 |
atagccgcaggttccatcctactcttaatatttttttatattctaaagtgacaaataaaacgaatcaataaaatatttcataacaaattttgatacaatg |
42039244 |
T |
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| Q |
519 |
tttgttcatttctctaagagtttggctaattggaagtgaatgagtattaa-------ttttgactatatgttaatgcagaaaattgtataccagaaagtg |
611 |
Q |
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| T |
42039245 |
tttgttcatttctctaagagtttggctaattggaagtgaacgagtattaattttgatttttgactatatgttaatgcagaaaattgtataccagaaagtg |
42039344 |
T |
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| Q |
612 |
ttgtggcatcaatcacccatgatatatt |
639 |
Q |
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| T |
42039345 |
ttgtggcatcaatcacccatgatatatt |
42039372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 5 - 146
Target Start/End: Original strand, 42038699 - 42038840
Alignment:
| Q |
5 |
cacatctatggtcatggcaatgtcaaaggtacaaccacactaagtacgtgtctgatatcacggtggttttgccagaatcacgttgagcccatgtgattgt |
104 |
Q |
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| T |
42038699 |
cacatctatggtcatggcaatgtcaaaggtacaaccacactaagtacgtgtctgatatcacagtggttttgccagaatcacgttgagccgatgtgattgt |
42038798 |
T |
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| Q |
105 |
ggcaaagtcactcacttagtcagtgtgatactgaacatgtac |
146 |
Q |
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| T |
42038799 |
ggcaaagtcactgacttagtcactgggatactgaacatgtac |
42038840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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