View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3237_high_52 (Length: 375)
Name: NF3237_high_52
Description: NF3237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3237_high_52 |
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Alignment Details
Target: chr2 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 1 - 368
Target Start/End: Complemental strand, 3088530 - 3088164
Alignment:
| Q |
1 |
atcggctgatacaaaatgaaagatatctatgataagacaaagggagtaatatgataaaagaaattttaaaaatctttagacaaacctggtgaatatctcc |
100 |
Q |
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| T |
3088530 |
atcggctgatatgaaatgaaagatatctatgataagacaaagggagtaatatgataaaagaaattttaaaaatctttagacaaacctggtgaatatctcc |
3088431 |
T |
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| Q |
101 |
catgaagtgtgacaagaacaataatgcctcggtcatattatctgcaatatctccagttaatggtannnnnnnnnnnnnaacaaaatctccagtaattaat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |
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| T |
3088430 |
catgaagtgtgacaagaacaataatgcctcggtcatattatctgcaatatctccagttaatagtatttttttttttt-aacaaaatctccagtaattaat |
3088332 |
T |
|
| Q |
201 |
atcatgaagtaaaataagtctaaaaatttctgaaagggaaaataaatgacagacatgagttccttacatctacgatcagatgttccctctttgtaatgag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3088331 |
atcatgaagtaaaataagtctaaaaatttctgaaagggaaaaaaaatgacagacatgagttccttacatctacgatcagatgttccctctttgtaatgag |
3088232 |
T |
|
| Q |
301 |
aaagttgagaagtgaaatttttgatagctcctgcaacacacatatcctcatggcagtcccctatgttt |
368 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |
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| T |
3088231 |
aaagttgagaagtgaaatttttgatagctcctgcaacacacatgtcctcaaggcagtcccctatgttt |
3088164 |
T |
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