View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3237_high_53 (Length: 374)
Name: NF3237_high_53
Description: NF3237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3237_high_53 |
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Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-100; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 159 - 352
Target Start/End: Complemental strand, 21847542 - 21847349
Alignment:
| Q |
159 |
tttccaatttacgtgatgctttacaagttgaagaagcaaatgccatcaaagagcgtgaggcagcacagaaagccattcaagaagcacctctagttattaa |
258 |
Q |
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| T |
21847542 |
tttccaatttacatgatgctttacaagttgaagaagcaaatgccatcaaagagcgtgaggcagcacagaaagccattcaagaagcacctctagttattaa |
21847443 |
T |
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| Q |
259 |
agagactcctgttataattgaagatactaaaaagattaattctttaatggctgaagttaatagtttgaagaaaccaccagaccgaagcggtgtt |
352 |
Q |
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| T |
21847442 |
agagactcctgttataattgaagatactaaaaagattaattctttaatggctgaagttaatagtttgaagaaaccactagaccgaagcggtgtt |
21847349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 21847697 - 21847601
Alignment:
| Q |
1 |
aagaatgtgttcaagatattacattggctgtggaattttgaaagatcttgacaatggatctatgttgaaattcaaagacattgtcaaacattcaagg |
97 |
Q |
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| T |
21847697 |
aagaatgtgttcaagatattacattggctgtggaattttgaaagatcttgacaatggatctatgttgaaattcgaagacattgtcaaacattcaagg |
21847601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 96; Significance: 5e-47; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 180 - 328
Target Start/End: Complemental strand, 52149562 - 52149408
Alignment:
| Q |
180 |
tacaagttgaagaagcaaatgcca------tcaaagagcgtgaggcagcacagaaagccattcaagaagcacctctagttattaaagagactcctgttat |
273 |
Q |
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| T |
52149562 |
tacaagttgaagaagcaaatgccaaggtcatcaaagagcgtgaggcagcacagaaagctattcaagatgcacccccagttattaaagagactcctgttat |
52149463 |
T |
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| Q |
274 |
aattgaagatactaaaaagattaattctttaatggctgaagttaatagtttgaag |
328 |
Q |
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| T |
52149462 |
aattgaagataccgaaaagattaattctttactggctgaagtcaattgtttgaag |
52149408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 230 - 346
Target Start/End: Complemental strand, 367665 - 367549
Alignment:
| Q |
230 |
gccattcaagaagcacctctagttattaaagagactcctgttataattgaagatactaaaaagattaattctttaatggctgaagttaatagtttgaaga |
329 |
Q |
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| T |
367665 |
gccattcaagaagcacctccaattattaaagagactcctgttataattgaagatactgaaaagattaactctttaatggctgaagtcaatagtttgagga |
367566 |
T |
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| Q |
330 |
aaccaccagaccgaagc |
346 |
Q |
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| T |
367565 |
aaccaccagaccgaagc |
367549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 6185939 - 6185867
Alignment:
| Q |
1 |
aagaatgtgttcaagatattacattggctgtggaattttgaaagatcttgacaatggatctatgttgaaattc |
73 |
Q |
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| T |
6185939 |
aagaatgtgttcaagatactatgatggttatggaattttgaaagatcttgacaatgaatctatgctgaaattc |
6185867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 306 - 348
Target Start/End: Original strand, 37190533 - 37190575
Alignment:
| Q |
306 |
tggctgaagttaatagtttgaagaaaccaccagaccgaagcgg |
348 |
Q |
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| T |
37190533 |
tggctgaagttaatagtttgaagaaagcaccagaccgaagcgg |
37190575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 306 - 348
Target Start/End: Complemental strand, 22511448 - 22511406
Alignment:
| Q |
306 |
tggctgaagttaatagtttgaagaaaccaccagaccgaagcgg |
348 |
Q |
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|||||||||||||||||||||||||| ||||||| |||||||| |
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| T |
22511448 |
tggctgaagttaatagtttgaagaaagcaccagatcgaagcgg |
22511406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 306 - 348
Target Start/End: Complemental strand, 22518748 - 22518706
Alignment:
| Q |
306 |
tggctgaagttaatagtttgaagaaaccaccagaccgaagcgg |
348 |
Q |
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|||||||||||||||||||||||||| ||||||| |||||||| |
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| T |
22518748 |
tggctgaagttaatagtttgaagaaagcaccagatcgaagcgg |
22518706 |
T |
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