View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3237_high_54 (Length: 374)
Name: NF3237_high_54
Description: NF3237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3237_high_54 |
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Alignment Details
Target: chr8 (Bit Score: 158; Significance: 5e-84; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 91 - 356
Target Start/End: Complemental strand, 2164477 - 2164212
Alignment:
| Q |
91 |
atattatgcttgatattgtttatcttccctgccctaaagatgtcatctcatggtggtaaattgaattcgaatgacgtggatgccttgatcatcacatttg |
190 |
Q |
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| T |
2164477 |
atattatgcttgatattgattatcttccctgccctaaagatgtcatcttatgatggtaaattcaatatgattgtcgtggatgtcttgatcatcccacttg |
2164378 |
T |
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| Q |
191 |
ttatagtttatcaaataattatactttgtattacgacaaatcaccctcctaacaacagcatatttggggtcttattcatacttctgctatcaactgcaat |
290 |
Q |
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|||||||||||||||||||||||||||||| || | |||||| | ||||||||||| |||||||||||||||||| ||||||||||||||||||| |
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| T |
2164377 |
ttatagtttatcaaataattatactttgtaatatgtacgatcaccatagaaacaacagcatctttggggtcttattcataattctgctatcaactgcaat |
2164278 |
T |
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| Q |
291 |
atcaattacagaagtgattcttgtttcgaagactgctgctgtcgttatttcaatcacttggttctt |
356 |
Q |
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| T |
2164277 |
atcaattacagaagtgattcttgtttcgaagaccgctactatcgttatttcgatcacttggttctt |
2164212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 91 - 354
Target Start/End: Complemental strand, 2162264 - 2162001
Alignment:
| Q |
91 |
atattatgcttgatattgtttatcttccctgccctaaagatgtcatctcatggtggtaaattgaattcgaatgacgtggatgccttgatcatcacatttg |
190 |
Q |
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| T |
2162264 |
atattatgcttgctgttgattatcttccctgcactaaagatgtcatcagctgatggtgaattgaatgagactgtcgtgactgccttgatcatcagttttg |
2162165 |
T |
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| Q |
191 |
ttatagtttatcaaataattatactttgtattacgacaaatcaccctcctaacaacagcatatttggggtcttattcatacttctgctatcaactgcaat |
290 |
Q |
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| T |
2162164 |
ttatatctattcagctatgtatagtctatcttgcgagctttcgccctagtaacagcagcatctttgggatcttattcatacttcttctatcaagtgcaat |
2162065 |
T |
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| Q |
291 |
atcaattacagaagtgattcttgtttcgaagactgctgctgtcgttatttcaatcacttggttc |
354 |
Q |
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| T |
2162064 |
atcatttatagaagtgattcttgtttcgacgactgctactatcgttatttcgatcacttggttc |
2162001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 46
Target Start/End: Complemental strand, 2164532 - 2164497
Alignment:
| Q |
11 |
taatctcatgaacacaatgataaatatttaggtatc |
46 |
Q |
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| T |
2164532 |
taatctcatgaacacaatgataaatatttaggtatc |
2164497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 263 - 318
Target Start/End: Complemental strand, 2181676 - 2181621
Alignment:
| Q |
263 |
tattcatacttctgctatcaactgcaatatcaattacagaagtgattcttgtttcg |
318 |
Q |
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| T |
2181676 |
tattcataattctgctatcaactgcaatatcgtttatagaagtgagtcttgtttcg |
2181621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 290
Target Start/End: Complemental strand, 1455919 - 1455871
Alignment:
| Q |
242 |
acaacagcatatttggggtcttattcatacttctgctatcaactgcaat |
290 |
Q |
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| T |
1455919 |
acaacagaatctttgggatcttattcatacttttgctatcaactgcaat |
1455871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 290
Target Start/End: Original strand, 1567426 - 1567474
Alignment:
| Q |
242 |
acaacagcatatttggggtcttattcatacttctgctatcaactgcaat |
290 |
Q |
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||||||| || |||||| |||||||||||||| |||||||||||||||| |
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| T |
1567426 |
acaacagaatctttgggatcttattcatacttttgctatcaactgcaat |
1567474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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