View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3237_high_55 (Length: 369)
Name: NF3237_high_55
Description: NF3237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3237_high_55 |
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Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 8 - 352
Target Start/End: Complemental strand, 2854505 - 2854163
Alignment:
| Q |
8 |
cgaagaatatgtattgcaaattaaaatctataaaac-gaatggaaattttttgaggcatgaagaaaatatcgtgcaagacattttaggaaagnnnnnnnn |
106 |
Q |
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| T |
2854505 |
cgaaaaatatgtattgcaaa----aatctataaaactgaagggaaattttttgaggcatgaagaaaatatcgtgcaagacattttaggaaagaaaaaaaa |
2854410 |
T |
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| Q |
107 |
n--gtaggggtgagggactagatggtgggtatggaaataaaaaacaacgaacaaagggtaataatttcacacgcaaagtaatctaatctagctaggaaat |
204 |
Q |
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| T |
2854409 |
aaagtaggggtgagggactagatggtgggtatggaaataaaaaacaacaaacaaagggtaataatttcacacgcaaagtaatctaatctagctaggaaat |
2854310 |
T |
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| Q |
205 |
ttccaaatttggcttcttttacaatcctggcatgaacaaatggtaataatattgtttannnnnnnatatctgtaatgattttgtaccatagttgtcaaat |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||| |
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| T |
2854309 |
ttccaaatttggcttcttttacaatcctggcatgaacaaatggtaataatattgttta-ttttttatatctgtaatgattttgtactatagttttcaaat |
2854211 |
T |
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| Q |
305 |
tttggcataatctatgatgatatacataatctacttcagctggaaact |
352 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2854210 |
tttggcataatctatgatgatatacataatctacttcagctggaaact |
2854163 |
T |
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