View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3237_high_56 (Length: 367)
Name: NF3237_high_56
Description: NF3237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3237_high_56 |
 | |
|
| [»] chr2 (2 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 18 - 367
Target Start/End: Complemental strand, 43797432 - 43797098
Alignment:
| Q |
18 |
aatacgtgcatgcatgattaacaattgtctcattgaaaaccttactcaaattaaagaataccaaagataaaaagtgggacaagaaaaacgaaagttacaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
43797432 |
aatacgtgcatgcatgattaacaattgtctcattgaaaaccttactcaaa-----gaataccaaagataaaaagttggacaagaaaaacgaaagttacaa |
43797338 |
T |
|
| Q |
118 |
agactaaactcataaggaatcaatgaaacatatactcaagaagaccaaaggataatcctgttaaaaacctcgatgaataatacttactctatttcttaag |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
43797337 |
agactaaactcataaggaatcaatgaaacatatactcaagaagaccaaaggataatcctgtta----------tgaataatacttactctatttcttaag |
43797248 |
T |
|
| Q |
218 |
aaatcatcacgggtaaaatttagaataaggtaaaagaagctaattacatgcacagaacataaattttaagcatctaaataaaacatcaacaactgaacaa |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43797247 |
aaatcatcacgggtaaaatttagaataaggtaaaagaagctaattacatgcacagaacagaaattttaagcatctaaataaaacatcaacaactgaacaa |
43797148 |
T |
|
| Q |
318 |
atgtaaaaattaatatagattataatgtaataaaaagcagaaagcatgca |
367 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43797147 |
atgtaaaaattaatatagattataatgtaataaaaagcagaaagcatgca |
43797098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 114 - 212
Target Start/End: Complemental strand, 43798447 - 43798345
Alignment:
| Q |
114 |
acaaagactaaactcataaggaa-tcaatgaaacatatactcaagaagaccaaaggataatcctg----ttaaaaacctcgatgaataatacttactcta |
208 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| |||||||||||||| ||| ||||||||| |||||| |||||||||| |||| || ||||| |
|
|
| T |
43798447 |
acaaagactaaactcataaggaaatcaatgaaacatgtactcaagaagacc-aagcataatcctgttaattaaaagcctcgatgaaaaatagttgctcta |
43798349 |
T |
|
| Q |
209 |
tttc |
212 |
Q |
| |
|
|||| |
|
|
| T |
43798348 |
tttc |
43798345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University