View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3237_high_61 (Length: 351)
Name: NF3237_high_61
Description: NF3237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3237_high_61 |
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Alignment Details
Target: chr8 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 6 - 334
Target Start/End: Complemental strand, 3426676 - 3426348
Alignment:
| Q |
6 |
gtccaagaatataaagtcggtttcacttttgagtttactaaaattcgaattaacaactaagtcaaatcgaaattgatacctgaattgtattgaatcttta |
105 |
Q |
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|||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||||| |||||||||||||||||| |
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| T |
3426676 |
gtccaacaatgtaaagtcggtttcacttttgagtttactaaaattcgaattaacaactaagtcatattgaaagcgatacctaaattgtattgaatcttta |
3426577 |
T |
|
| Q |
106 |
acctgtacaatttgctcatgttatgcttattcttttgctcattattcatttacaacaacaatgtctttcttttgttctatgaagatgatcttcttttgac |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3426576 |
acctgtacaatttgctcatgttatgcttattcttttgctcattattcatttacaacaacaatgtctttcttttgttctatgaagatgatcttcttttgac |
3426477 |
T |
|
| Q |
206 |
atgtattcaaagtgaattcttaaagcagtaaatggaacaactctcaaataggttctcacttaaatatcttggctatcctcattaattcctgagaattgaa |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
3426476 |
atgtattcaaagtgaattcttaaagcagtaaatggaacaactgtcaaataggttctcacttaaatatcttggccatcctcattaattcctgagaattgaa |
3426377 |
T |
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| Q |
306 |
ctcattcccacaaaggagggtatcctttt |
334 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
3426376 |
ctcattcccacaaaggagggtatcctttt |
3426348 |
T |
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