View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3237_high_69 (Length: 332)

Name: NF3237_high_69
Description: NF3237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3237_high_69
NF3237_high_69
[»] chr8 (5 HSPs)
chr8 (1-240)||(29386819-29387057)
chr8 (152-307)||(8833749-8833904)
chr8 (227-317)||(29386701-29386791)
chr8 (1-125)||(8834257-8834381)
chr8 (59-176)||(7272276-7272393)
[»] scaffold0209 (4 HSPs)
scaffold0209 (1-158)||(7401-7558)
scaffold0209 (1-158)||(20855-21012)
scaffold0209 (162-232)||(7584-7654)
scaffold0209 (162-232)||(21038-21108)
[»] chr5 (4 HSPs)
chr5 (55-232)||(14417024-14417201)
chr5 (224-307)||(30654960-30655043)
chr5 (152-226)||(30654865-30654939)
chr5 (51-97)||(30654762-30654808)
[»] chr7 (1 HSPs)
chr7 (60-235)||(25035415-25035590)
[»] chr2 (3 HSPs)
chr2 (132-232)||(18815015-18815115)
chr2 (225-314)||(45340793-45340882)
chr2 (207-314)||(32636072-32636180)
[»] chr6 (1 HSPs)
chr6 (228-307)||(7913172-7913251)
[»] chr1 (2 HSPs)
chr1 (196-296)||(33153512-33153613)
chr1 (19-104)||(33153341-33153426)
[»] chr4 (1 HSPs)
chr4 (242-307)||(8353573-8353638)


Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-106; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 29387057 - 29386819
Alignment:
Q  1 aatacttgttgtagatacgtcaaaatcacaagttcagtctttatgtgtttctgggcatagtttgcacttatggttgctgcaagtttaagggagatgaact 100  Q
    |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  29387057 aatacttgttgtagatacgtcaaaatcacaagttcagtctatatgagtttctgggcatagtttgcacttatggttgctgcaagtttaagggagatgagct 29386958  T
Q  101 cttcgtttgggttggtcagagattcaccgtggttgacattcgatgtgtgtaatttgaatttaacttgtttgatttgcttaaattagagtggtaactactc 200  Q
     ||||||||||||||| ||||||||||  ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  29386957 tttcgtttgggttggt-agagattcactatggttgacattcgatgtgtgtcatttgaattgaacttgtttgatttgcttaaattagagtggtaactactc 29386859  T
Q  201 aatttgtatttccaatgacatacaatgtatttgttatttt 240  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  29386858 aatttgtatttccaatgacatacaatgtatttgttttttt 29386819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 152 - 307
Target Start/End: Complemental strand, 8833904 - 8833749
Alignment:
Q  152 atttgaatttaacttgtttgatttgcttaaattagagtggtaactactcaatttgtatttccaatgacatacaatgtatttgttattttaattatcaatc 251  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||| ||| |||||||||| |||||| ||||||||||    
T  8833904 atttgaattaaacttgtttgatttgcttaaattagggtggtaactacccaatttgtatttccattgatatataatgtatttgatattttcattatcaatc 8833805  T
Q  252 aattttaccttgttgaaatctttgaaatcaaatatcttaatgttttactgattgat 307  Q
    ||||||| ||||||||||| |||||||  |||||||| ||||||||||||||||||    
T  8833804 aattttagcttgttgaaatatttgaaactaaatatctcaatgttttactgattgat 8833749  T

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Target: chr8; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 227 - 317
Target Start/End: Complemental strand, 29386791 - 29386701
Alignment:
Q  227 gtatttgttattttaattatcaatcaattttaccttgttgaaatctttgaaatcaaatatcttaatgttttactgattgatatacactaat 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29386791 gtatttgttattttaattatcaatcaattttaccttgttgaaatctttgaaatcaaatatcttaatgttttactgattgatatacactaat 29386701  T

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Target: chr8; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 8834381 - 8834257
Alignment:
Q  1 aatacttgttgtagatacgtcaaaatcacaagttcagtctttatgtgtttctgggcatagtttgcacttatggttgctgcaagtttaagggagatgaact 100  Q
    ||||||| ||||||| ||||||||||||||||||||  || || ||| | ||||||||||||||||||||||||||||||||||||| |||||||| |||    
T  8834381 aatacttcttgtagacacgtcaaaatcacaagttcaaactatacgtgctgctgggcatagtttgcacttatggttgctgcaagtttaggggagatgcact 8834282  T
Q  101 cttcgtttgggttggtcagagattc 125  Q
    |||   | ||| |||||||||||||    
T  8834281 cttttgtagggctggtcagagattc 8834257  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 59 - 176
Target Start/End: Complemental strand, 7272393 - 7272276
Alignment:
Q  59 agtttgcacttatggttgctgcaagtttaagggagatgaactcttcgtttgggttggtcagagattcaccgtggttgacattcgatgtgtgtaatttgaa 158  Q
    |||||||||| |||||||||||| ||| | || |||||| ||||||  |   |||||||||| ||| |  ||| ||||||| | || |||| ||||||||    
T  7272393 agtttgcactaatggttgctgcatgttcatggcagatgagctcttctatcaagttggtcagatatttattgtgtttgacatacaatatgtgaaatttgaa 7272294  T
Q  159 tttaacttgtttgatttg 176  Q
    || |||||||||||||||    
T  7272293 ttaaacttgtttgatttg 7272276  T

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Target: scaffold0209 (Bit Score: 82; Significance: 1e-38; HSPs: 4)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 7401 - 7558
Alignment:
Q  1 aatacttgttgtagatacgtcaaaatcacaagttcagtctttatgtgtttctgggcatagtttgcacttatggttgctgcaagtttaagggagatgaact 100  Q
    ||||||| ||||||||||||||| |||||||||||||||| || ||| | ||||||||||||||||||||||||||||||||||| |||||||| |  ||    
T  7401 aatacttcttgtagatacgtcaatatcacaagttcagtctatacgtgctgctgggcatagtttgcacttatggttgctgcaagttcaagggagacgtgct 7500  T
Q  101 cttcgtttgggttggtcagagattcaccgtggttgacattcgatgtgtgtaatttgaa 158  Q
    ||||  | ||| |||||||||||||   ||||||||||| |||||||||| |||||||    
T  7501 cttctctagggctggtcagagattcgatgtggttgacatacgatgtgtgtcatttgaa 7558  T

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Target: scaffold0209; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 20855 - 21012
Alignment:
Q  1 aatacttgttgtagatacgtcaaaatcacaagttcagtctttatgtgtttctgggcatagtttgcacttatggttgctgcaagtttaagggagatgaact 100  Q
    ||||||| ||||||||||||||| |||||||||||||||| || ||| | ||||||||||||||||||||||||||||||||||| |||||||| |  ||    
T  20855 aatacttcttgtagatacgtcaatatcacaagttcagtctatacgtgctgctgggcatagtttgcacttatggttgctgcaagttcaagggagacgtgct 20954  T
Q  101 cttcgtttgggttggtcagagattcaccgtggttgacattcgatgtgtgtaatttgaa 158  Q
    ||||  | ||| |||||||||||||   ||||||||||| |||||||||| |||||||    
T  20955 cttctctagggctggtcagagattcgatgtggttgacatacgatgtgtgtcatttgaa 21012  T

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Target: scaffold0209; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 162 - 232
Target Start/End: Original strand, 7584 - 7654
Alignment:
Q  162 aacttgtttgatttgcttaaattagagtggtaactactcaatttgtatttccaatgacatacaatgtattt 232  Q
    ||||| |||||||||||| |||||| |||||| ||| | |||||||||||||||||| |||||||||||||    
T  7584 aacttttttgatttgctttaattagggtggtatctaatgaatttgtatttccaatgatatacaatgtattt 7654  T

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Target: scaffold0209; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 162 - 232
Target Start/End: Original strand, 21038 - 21108
Alignment:
Q  162 aacttgtttgatttgcttaaattagagtggtaactactcaatttgtatttccaatgacatacaatgtattt 232  Q
    ||||| |||||||||||| |||||| |||||| ||| | |||||||||||||||||| |||||||||||||    
T  21038 aacttttttgatttgctttaattagggtggtatctaatgaatttgtatttccaatgatatacaatgtattt 21108  T

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Target: chr5 (Bit Score: 82; Significance: 1e-38; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 55 - 232
Target Start/End: Complemental strand, 14417201 - 14417024
Alignment:
Q  55 gcatagtttgcacttatggttgctgcaagtttaagggagatgaactcttcgtttgggttggtcagagattcaccgtggttgacattcgatgtgtgtaatt 154  Q
    |||||| |||||||||||||||||||||||| | ||||||||| ||||||    ||| ||||||||||||||  |  |||||||  |||||||||| |||    
T  14417201 gcatagcttgcacttatggttgctgcaagttcaggggagatgagctcttctagagggatggtcagagattcattgcagttgacaaacgatgtgtgtcatt 14417102  T
Q  155 tgaatttaacttgtttgatttgcttaaattagagtggtaactactcaatttgtatttccaatgacatacaatgtattt 232  Q
    |||||| ||||||||||||||| ||||||||| ||||||  |||||| ||| |||||||||||| |||||||||||||    
T  14417101 tgaattaaacttgtttgatttgtttaaattagggtggtaggtactcattttatatttccaatgatatacaatgtattt 14417024  T

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Target: chr5; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 224 - 307
Target Start/End: Original strand, 30654960 - 30655043
Alignment:
Q  224 aatgtatttgttattttaattatcaatcaattttaccttgttgaaatctttgaaatcaaatatcttaatgttttactgattgat 307  Q
    |||||||||||| |||| ||||||||||||||| | |||||||||||||||||| |||||||| | ||| ||||||||||||||    
T  30654960 aatgtatttgttcttttcattatcaatcaatttcagcttgttgaaatctttgaagtcaaatatataaatattttactgattgat 30655043  T

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Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 152 - 226
Target Start/End: Original strand, 30654865 - 30654939
Alignment:
Q  152 atttgaatttaacttgtttgatttgcttaaattagagtggtaactactcaatttgtatttccaatgacatacaat 226  Q
    ||||||||| ||||||||||||||||||||||||| |||||| ||| || |||| |||| ||||||| |||||||    
T  30654865 atttgaattaaacttgtttgatttgcttaaattagggtggtagctattcgatttatattaccaatgatatacaat 30654939  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 97
Target Start/End: Original strand, 30654762 - 30654808
Alignment:
Q  51 ctgggcatagtttgcacttatggttgctgcaagtttaagggagatga 97  Q
    ||||| ||||||||||||||||||||||||||| | | |||||||||    
T  30654762 ctgggaatagtttgcacttatggttgctgcaagctcaggggagatga 30654808  T

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Target: chr7 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 60 - 235
Target Start/End: Complemental strand, 25035590 - 25035415
Alignment:
Q  60 gtttgcacttatggttgctgcaagtttaagggagatgaactcttcgtttgggttggtcagagattcaccgtggttgacattcgatgtgtgtaatttgaat 159  Q
    |||||||||| ||||||||||||||| |||| |||||| ||||||    ||| ||||||||||||||  |  ||||| |  |||||||||| |||| |||    
T  25035590 gtttgcacttgtggttgctgcaagttcaaggaagatgagctcttctagagggatggtcagagattcagtgcagttgataaacgatgtgtgtcatttaaat 25035491  T
Q  160 ttaacttgtttgatttgcttaaattagagtggtaactactcaatttgtatttccaatgacatacaatgtatttgtt 235  Q
    | ||||||||||||||| ||||||||| |||||| ||||||| ||| |||||||||||| ||||||| ||||||||    
T  25035490 taaacttgtttgatttgtttaaattagggtggtagctactcattttatatttccaatgatatacaatatatttgtt 25035415  T

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Target: chr2 (Bit Score: 61; Significance: 4e-26; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 132 - 232
Target Start/End: Complemental strand, 18815115 - 18815015
Alignment:
Q  132 gttgacattcgatgtgtgtaatttgaatttaacttgtttgatttgcttaaattagagtggtaactactcaatttgtatttccaatgacatacaatgtatt 231  Q
    ||||||| | ||||||||| ||||||||| ||||||||||||||||||||||||| |||||| ||||||| ||| |||||||||||| ||||| ||||||    
T  18815115 gttgacaatggatgtgtgtcatttgaattaaacttgtttgatttgcttaaattagggtggtagctactcattttatatttccaatgatatacattgtatt 18815016  T
Q  232 t 232  Q
    |    
T  18815015 t 18815015  T

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Target: chr2; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 225 - 314
Target Start/End: Complemental strand, 45340882 - 45340793
Alignment:
Q  225 atgtatttgttattttaattatcaatcaattttaccttgttgaaatctttgaaatcaaatatcttaatgttttactgattgatatacact 314  Q
    |||||||||||||||| |||| |||| ||||||| ||||||| |||||||||||||| |||||||||||||| | |||||||| ||||||    
T  45340882 atgtatttgttattttcattaccaattaattttagcttgttggaatctttgaaatcacatatcttaatgtttaagtgattgatctacact 45340793  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 207 - 314
Target Start/End: Complemental strand, 32636180 - 32636072
Alignment:
Q  207 tatttccaatgacatacaatgtatttgttattttaattatcaatcaattttaccttgtt-gaaatctttgaaatcaaatatcttaatgttttactgattg 305  Q
    |||||||| ||| | ||||||||||||||||||| || |||| | ||||||| ||  || | |||||||||| ||| || ||||||||||||| ||||||    
T  32636180 tatttccactgataaacaatgtatttgttattttcatcatcagtaaattttagctgatttgcaatctttgaagtcacatgtcttaatgttttagtgattg 32636081  T
Q  306 atatacact 314  Q
    || ||||||    
T  32636080 atctacact 32636072  T

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Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 228 - 307
Target Start/End: Original strand, 7913172 - 7913251
Alignment:
Q  228 tatttgttattttaattatcaatcaattttaccttgttgaaatctttgaaatcaaatatcttaatgttttactgattgat 307  Q
    |||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||    
T  7913172 tatttgttcttttcattatcaatcaattttagcttgttgaaatctttgaaatcaaatatataaatgttttactgattgat 7913251  T

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Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 196 - 296
Target Start/End: Original strand, 33153512 - 33153613
Alignment:
Q  196 tactcaatttgtatttccaatgacatacaatgtatttgttattttaattatcaatcaatttta-ccttgttgaaatctttgaaatcaaatatcttaatgt 294  Q
    |||||| ||| ||||| |||||| ||| ||||||||||||||||| |||||  |||||||||| | ||||||||||||||||||| ||||||| ||||||    
T  33153512 tactcattttatattttcaatgatatataatgtatttgttattttcattatggatcaattttagcattgttgaaatctttgaaattaaatatcgtaatgt 33153611  T
Q  295 tt 296  Q
    ||    
T  33153612 tt 33153613  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 104
Target Start/End: Original strand, 33153341 - 33153426
Alignment:
Q  19 gtcaaaatcacaagttcagtctttatgtgtttctgggcatagtttgcacttatggttgctgcaagtttaagggagatgaactcttc 104  Q
    |||||||||||  ||||||| | |||| |||  |||  ||||||||| |||||||||||| |||||| | ||||||||| ||||||    
T  33153341 gtcaaaatcacccgttcagtatatatgcgttgttggttatagtttgcgcttatggttgcttcaagttcaggggagatgagctcttc 33153426  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 242 - 307
Target Start/End: Complemental strand, 8353638 - 8353573
Alignment:
Q  242 attatcaatcaattttaccttgttgaaatctttgaaatcaaatatcttaatgttttactgattgat 307  Q
    ||||||||||||||||| ||||||||||||||   ||||||||||||  |||||| || |||||||    
T  8353638 attatcaatcaattttagcttgttgaaatcttattaatcaaatatctagatgtttaacagattgat 8353573  T

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