View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3237_high_7 (Length: 637)
Name: NF3237_high_7
Description: NF3237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3237_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 436; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 20 - 495
Target Start/End: Complemental strand, 36841658 - 36841185
Alignment:
| Q |
20 |
ttcaccaccacaaaagtattagctattgaataatgtgtcacaaattgaagtgaaaaattgataagttcttaaaattgatatgacatagtatgactcaaat |
119 |
Q |
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| T |
36841658 |
ttcaccaccacaaaagtattagctactgaataatgtgtcacaaattgaagtgaaaaattgataagttcttaaaattgatatgacatagtatgactcaaat |
36841559 |
T |
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| Q |
120 |
aaattgagaccatctcatagtgttactgaagatgttgatattacaacaaaatataataaaatttggccacaattgcagttgtgatgctatctatcacata |
219 |
Q |
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| T |
36841558 |
aaattgagaccatctcatagtgttactgaagatgttgatattacaacaaaatataataaaatttggccacaattgcagttgtgatgctatctatcacata |
36841459 |
T |
|
| Q |
220 |
gatctccaaaatatttatttttgtagaccccaatttaattataatgcaggaactaccaaaacactcccacattaagtgacaataatgataatcaccacac |
319 |
Q |
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| T |
36841458 |
gatctccaaaatatttatttttgtagaccccaatttaattataatgcaggaactaccaaaacactcccacattaagtgacaataatgataa--accacgc |
36841361 |
T |
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| Q |
320 |
tgaaatggccatttatgaagtcaaaataatgaaagcaaaaatataatatagcatatgaaatttgaaatattctctgctgacaaaacaatgctttttcaag |
419 |
Q |
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| T |
36841360 |
tgaaatggccatttatgaagtcaaaataatgaaagcaaaaatataatatagcatatgaaatttgaaatattctctgctgacaaaacaatgctttttcaag |
36841261 |
T |
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| Q |
420 |
ctttcttgaatttctcttagcctcaagnnnnnnntcaagactaatctacactcattgctcatgaatagggagcagc |
495 |
Q |
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| T |
36841260 |
ctttcttgaatttctcttagcctcaagaaaaaaatcaagactaatctacactcattgctcatgaatagggagcagc |
36841185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 529 - 627
Target Start/End: Complemental strand, 36841151 - 36841053
Alignment:
| Q |
529 |
tagtttgaagagacagatacatcttaatactatatactacttgatgaattttcttatcttatttctaaaaaatgggagaagaatatttttactcctttg |
627 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36841151 |
tagtttgaagagacagatacatcttaatactatatactacttgatgaattttcttatcttatttctaaaaaatgggagaagaatatttttactcctttg |
36841053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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