View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3237_high_76 (Length: 306)

Name: NF3237_high_76
Description: NF3237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3237_high_76
NF3237_high_76
[»] chr5 (2 HSPs)
chr5 (143-287)||(4554808-4554952)
chr5 (32-116)||(4555098-4555182)
[»] chr2 (1 HSPs)
chr2 (153-273)||(41519719-41519841)
[»] chr8 (2 HSPs)
chr8 (31-116)||(12350324-12350417)
chr8 (230-275)||(12350114-12350159)
[»] chr1 (3 HSPs)
chr1 (31-116)||(11469362-11469455)
chr1 (141-241)||(4640697-4640798)
chr1 (230-275)||(11469621-11469666)
[»] chr4 (3 HSPs)
chr4 (62-112)||(6247105-6247155)
chr4 (230-275)||(6247326-6247371)
chr4 (31-63)||(22499528-22499560)
[»] chr6 (1 HSPs)
chr6 (31-63)||(34034630-34034662)


Alignment Details
Target: chr5 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 143 - 287
Target Start/End: Complemental strand, 4554952 - 4554808
Alignment:
Q  143 atctactacctcatacacggttcttcattttaatagtgaaattttgccattgaagttgaactgacgatgacaagggaatggttttggaaaatcaattttc 242  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  4554952 atctactacctcatacacggttcttcattttaatagtgaaattttgctattgaagttgaactgacggtgacaagggaatggttttggaaaatcaattttc 4554853  T
Q  243 ctgggctgataaggtttgaatgagaggaagaaagagacttgaagc 287  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  4554852 ctgggctgataaggtttgaatgagaggaagaaagagacttgaagc 4554808  T

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Target: chr5; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 32 - 116
Target Start/End: Complemental strand, 4555182 - 4555098
Alignment:
Q  32 ttggattggatttgggtgtggtttttcagttttgccttcaggaattagaaagaagcaacaaactcaatggaatttttgtatgaat 116  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4555182 ttggattggatttgggtgtggtttttcaattttgccttcaggaattagaaagaagcaacaaactcaatggaatttttgtatgaat 4555098  T

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Target: chr2 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 153 - 273
Target Start/End: Original strand, 41519719 - 41519841
Alignment:
Q  153 tcatacacggttcttcattttaatagtgaaattttgccattgaagttgaactgacgatgacaagggaatgg--ttttggaaaatcaattttcctgggctg 250  Q
    ||||||| |||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||  |||||||||||||||||| ||| ||||    
T  41519719 tcatacatggttcttcattttaattgtgaaattttgccattgaaattgaactgacggtgacaagggaatggttttttggaaaatcaatttttctgtgctg 41519818  T
Q  251 ataaggtttgaatgagaggaaga 273  Q
    | |||||||||| ||||||||||    
T  41519819 acaaggtttgaaggagaggaaga 41519841  T

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Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 31 - 116
Target Start/End: Complemental strand, 12350417 - 12350324
Alignment:
Q  31 cttggattggatttgggtgtggtttttcagttt--------tgccttcaggaattagaaagaagcaacaaactcaatggaatttttgtatgaat 116  Q
    |||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12350417 cttggattggatttgggtgtggtttttcagtttgtgggatttgccttcaggaattagaaagaagcaacaaactcaatggaatttttgtatgaat 12350324  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 230 - 275
Target Start/End: Complemental strand, 12350159 - 12350114
Alignment:
Q  230 aaaatcaattttcctgggctgataaggtttgaatgagaggaagaaa 275  Q
    |||||||||||||||  ||| |||||||||||||||||||||||||    
T  12350159 aaaatcaattttcctaagcttataaggtttgaatgagaggaagaaa 12350114  T

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Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 31 - 116
Target Start/End: Original strand, 11469362 - 11469455
Alignment:
Q  31 cttggattggatttgggtgtggtttttcagttt--------tgccttcaggaattagaaagaagcaacaaactcaatggaatttttgtatgaat 116  Q
    |||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11469362 cttggattggatttgggtgtggtttttcagtttgagggatttgccttcaggaattagaaagaagcaacaaactcaatggaatttttgtatgaat 11469455  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 141 - 241
Target Start/End: Complemental strand, 4640798 - 4640697
Alignment:
Q  141 ggatctactacctcatacacggttcttcattttaatagtgaaattttgccattgaagttgaactgacgatgacaagggaatgg-ttttggaaaatcaatt 239  Q
    |||| |||||||||||||| |||||||  ||||||| ||||||||||| ||||||| ||  | ||||  ||| |||| ||||| ||||||||||||||||    
T  4640798 ggatttactacctcatacatggttctttgttttaattgtgaaattttgtcattgaaatttcaatgacagtgataaggcaatggattttggaaaatcaatt 4640699  T
Q  240 tt 241  Q
    ||    
T  4640698 tt 4640697  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 230 - 275
Target Start/End: Original strand, 11469621 - 11469666
Alignment:
Q  230 aaaatcaattttcctgggctgataaggtttgaatgagaggaagaaa 275  Q
    |||||||||||||||  ||| |||||||||||||||||||||||||    
T  11469621 aaaatcaattttcctaagctaataaggtttgaatgagaggaagaaa 11469666  T

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Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 62 - 112
Target Start/End: Original strand, 6247105 - 6247155
Alignment:
Q  62 tttgccttcaggaattagaaagaagcaacaaactcaatggaatttttgtat 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6247105 tttgccttcaggaattagaaagaagcaacaaactcaatggaatttttgtat 6247155  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 230 - 275
Target Start/End: Original strand, 6247326 - 6247371
Alignment:
Q  230 aaaatcaattttcctgggctgataaggtttgaatgagaggaagaaa 275  Q
    |||||||||||||||| |||||||||||||||||||||||||||||    
T  6247326 aaaatcaattttcctgagctgataaggtttgaatgagaggaagaaa 6247371  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 63
Target Start/End: Original strand, 22499528 - 22499560
Alignment:
Q  31 cttggattggatttgggtgtggtttttcagttt 63  Q
    ||||||||| |||||||||||||||||||||||    
T  22499528 cttggattgaatttgggtgtggtttttcagttt 22499560  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 63
Target Start/End: Complemental strand, 34034662 - 34034630
Alignment:
Q  31 cttggattggatttgggtgtggtttttcagttt 63  Q
    |||||||||||||||||||||||||||||||||    
T  34034662 cttggattggatttgggtgtggtttttcagttt 34034630  T

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