View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3237_high_78 (Length: 303)
Name: NF3237_high_78
Description: NF3237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3237_high_78 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 153; Significance: 4e-81; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 130 - 303
Target Start/End: Original strand, 8145533 - 8145706
Alignment:
| Q |
130 |
tcgtaacgactgtgtagcaagtcttaggtggaacnnnnnnngaaggatgtcttaggtagaacaagaagtatcacattggatggaaaagccactgttgagc |
229 |
Q |
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| T |
8145533 |
tcgtaacgactgtgtagcaagtcttaggtggaactttttttgaaggatgtcttaggtagaacaagaagtatcacattggatggaaaagccactgttgagc |
8145632 |
T |
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| Q |
230 |
aatatataagtgaatggacccacctataaacctaatgccttaaggtttcggtgcagatgtggtctctaactcac |
303 |
Q |
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| T |
8145633 |
aatatataagtgaatggacccacctataaacctaatgccttaaggtttcggtgcagatgtggtctctaactcac |
8145706 |
T |
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Target: chr4; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 16 - 106
Target Start/End: Original strand, 8145223 - 8145313
Alignment:
| Q |
16 |
aatatcacagataataatcttcacatagtcaagtttttagatagaggaggcaatatatgatggttgtggttgtgttgtgattcttaaaata |
106 |
Q |
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| T |
8145223 |
aatatcacagataataatcttcacatagtcaagtttttagatagaggaggcaatatatgatggttgtggttgtgttgtgattcttaaaata |
8145313 |
T |
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