View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3237_high_79 (Length: 301)

Name: NF3237_high_79
Description: NF3237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3237_high_79
NF3237_high_79
[»] chr1 (3 HSPs)
chr1 (1-167)||(45285196-45285363)
chr1 (213-301)||(45286547-45286635)
chr1 (176-221)||(45286186-45286231)


Alignment Details
Target: chr1 (Bit Score: 152; Significance: 2e-80; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 45285196 - 45285363
Alignment:
Q  1 aatattcagaaaataagtgatggaagggaaggaagat-gtgttttgtttattgaggaacgagaaaacgaggaacaggcttaaccctattttatagtgtga 99  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  45285196 aatattcagaaaataagtgatggaagggaaggaagattgtgttttgcttattgaggaacgagaaaacgaggaacaggcataaccctattttatagtgtga 45285295  T
Q  100 atcctaatcaactctgaagcaagggaagataaacaatgcagagagagaaagaagatactgatttgggt 167  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45285296 atcctaatcaactctgaagcaagggaagataaacaatgcagagagagaaagaagatactgatttgggt 45285363  T

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Target: chr1; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 213 - 301
Target Start/End: Original strand, 45286547 - 45286635
Alignment:
Q  213 aaaatagtaaagttgaacaaacgcgaacgaagagaaggaacaagatttggggcaaataaagaaggaacataggagggacaagacatttt 301  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||    
T  45286547 aaaatagtaaagttgaacaaacgcgaacgaagagaaggaacaagatttagggcaaataaagaaggaacataggagtgacaagacatttt 45286635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 176 - 221
Target Start/End: Original strand, 45286186 - 45286231
Alignment:
Q  176 tagtaaaattgaacgaacatgaacgaagagaaggtaaaaaatagta 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  45286186 tagtaaaattgaacgaacatgaacgaagagaaggtaaaaaatagta 45286231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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