View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3237_high_88 (Length: 279)
Name: NF3237_high_88
Description: NF3237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3237_high_88 |
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| [»] scaffold0108 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 18 - 269
Target Start/End: Complemental strand, 12417298 - 12417047
Alignment:
| Q |
18 |
gtttgttaagctttggcttacaaaaatccaattgagattaatgagaagttgaaagtacaaatgtgcaagcatttgataattttgaacaagaaatgattca |
117 |
Q |
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| T |
12417298 |
gtttgttaagctttggcttacaaaaatccaattgagattaatgagaagttgaaagtacaaatgtgcaagcatttgataattttgaataagaaatgattca |
12417199 |
T |
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| Q |
118 |
ttgaaatcaaataaatttcaacgaaatttaattttctatttctctaggcttgttccatttgcttcctttttagtataattcaagctcaatagtgttttat |
217 |
Q |
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| T |
12417198 |
ttgaaatcaaataaatttcaatgaaatttaattttctatttctctaggcttgttccatttgcttcctttttagtataattcaagctcaatagtgttttat |
12417099 |
T |
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| Q |
218 |
tgttaacaattcgatgtcaacaaatttttataccattcagcactagcctttg |
269 |
Q |
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| T |
12417098 |
tgttaacaattcgatgtcaacaaatttttataccattcagcactagcctttg |
12417047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 39 - 220
Target Start/End: Original strand, 25012686 - 25012866
Alignment:
| Q |
39 |
aaaaatccaattgagattaatgagaagttgaaagtacaaatgtgcaagcatttgataattttgaacaagaaatgattcattgaaatcaaataaatttcaa |
138 |
Q |
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| T |
25012686 |
aaaaatccaatcgagcttaaagaaaagatgaaagtaggtaaatgcaagcatctgataattttgaacaataaatgattcatttaaatcaattaaatttcaa |
25012785 |
T |
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| Q |
139 |
cgaaatttaattttctatttctctaggcttgttccatttgcttcctttttagtataattcaagctcaatagtgttttattgt |
220 |
Q |
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| T |
25012786 |
tgaaatttatttgtctttttctctatgtgtgatccatttgcttccctttttgta-aaatcaagctcaatagtgttttcttgt |
25012866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0108 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: scaffold0108
Description:
Target: scaffold0108; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 24 - 269
Target Start/End: Complemental strand, 19523 - 19276
Alignment:
| Q |
24 |
taagctttggcttacaaaaatccaattgagattaatgagaagttgaaagtacaaatgtgcaagcatttgataattttgaacaagaaatgattcattgaaa |
123 |
Q |
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|||||||| ||||||| |||| |||||||| |||| | | ||||||| |||| | ||||||| |||||| | |||||||| |||| ||| ||| ||| |
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| T |
19523 |
taagcttttgcttacataaattcaattgagcttaaaaaaacgttgaaactacagaagtgcaagtatttgacggtattgaacaataaatcattaatttaaa |
19424 |
T |
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| Q |
124 |
tcaaataaatttcaacgaaatttaattttctatttctctaggcttgttccatttgcttcc--tttttagtataattcaagctcaatagtgttttattgtt |
221 |
Q |
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| T |
19423 |
tcgattaaatttcaatgaaatatatttttctatttctctatgtttgatccattttcttccctttttgagtacaatccaagctcaataggcttttattttc |
19324 |
T |
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| Q |
222 |
aacaattcgatgtcaacaaatttttataccattcagcactagcctttg |
269 |
Q |
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| T |
19323 |
tataattcgatgtcataaaatttctataccatttagcactagcctttg |
19276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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