View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3237_high_90 (Length: 278)
Name: NF3237_high_90
Description: NF3237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3237_high_90 |
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Alignment Details
Target: chr1 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 17 - 117
Target Start/End: Original strand, 5304264 - 5304364
Alignment:
| Q |
17 |
acttacaattgaaatacaagataaaaacgagcaaagtaaaactcatcaaagtgacaaaattttagcattctaaactcaactaaaactccttcaaatttga |
116 |
Q |
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| T |
5304264 |
acttacaattgaaatacaagataaaaacgagcaaagtaaaactcatcaaagtgacaaaattttagcattctaaactcaactaaaactccttcaaatttga |
5304363 |
T |
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| Q |
117 |
g |
117 |
Q |
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| T |
5304364 |
g |
5304364 |
T |
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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 172
Target Start/End: Complemental strand, 16292656 - 16292528
Alignment:
| Q |
46 |
agcaaagtaaaactcatcaaagtga--caaaattttagcattctaaactcaactaaaactccttcaaatttgagcataatctctatcatcgatttttctt |
143 |
Q |
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|||||| || ||||||||||||||| |||||| ||||||||||| |||||||| |||||||||||||||||||| | | || | | |||||||| |
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| T |
16292656 |
agcaaaatagaactcatcaaagtgatacaaaatcttagcattctatgttcaactaatgacccttcaaatttgagcataatttatgtctttgctttttctt |
16292557 |
T |
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| Q |
144 |
cttttccagttgcggcagatgcactcaca |
172 |
Q |
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| T |
16292556 |
cttttctagttacatcggatgcactcaca |
16292528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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