View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3237_high_94 (Length: 271)

Name: NF3237_high_94
Description: NF3237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3237_high_94
NF3237_high_94
[»] chr7 (24 HSPs)
chr7 (98-271)||(26972202-26972382)
chr7 (98-268)||(45782659-45782836)
chr7 (98-271)||(34108438-34108618)
chr7 (98-261)||(28307494-28307664)
chr7 (98-261)||(36346564-36346733)
chr7 (100-261)||(30887722-30887890)
chr7 (98-271)||(31148302-31148481)
chr7 (98-268)||(7699882-7700059)
chr7 (98-268)||(7700080-7700257)
chr7 (98-268)||(7700278-7700455)
chr7 (98-268)||(7700476-7700653)
chr7 (98-225)||(34828129-34828256)
chr7 (98-268)||(13108163-13108338)
chr7 (98-271)||(42220963-42221142)
chr7 (98-223)||(5811163-5811288)
chr7 (100-271)||(21807324-21807501)
chr7 (98-195)||(29953571-29953669)
chr7 (98-260)||(23980154-23980322)
chr7 (98-219)||(46475094-46475216)
chr7 (98-261)||(36957451-36957619)
chr7 (6-78)||(6244923-6244995)
chr7 (160-260)||(15020305-15020408)
chr7 (160-222)||(20086690-20086752)
chr7 (98-173)||(42950036-42950111)
[»] chr5 (17 HSPs)
chr5 (98-271)||(2237288-2237468)
chr5 (98-271)||(14831556-14831736)
chr5 (98-271)||(39370939-39371119)
chr5 (97-271)||(13347140-13347321)
chr5 (98-268)||(40887941-40888118)
chr5 (114-271)||(9408054-9408218)
chr5 (98-230)||(31800617-31800749)
chr5 (98-271)||(1815619-1815795)
chr5 (101-271)||(27553376-27553552)
chr5 (98-218)||(42683670-42683791)
chr5 (191-271)||(33404529-33404615)
chr5 (157-219)||(17225387-17225449)
chr5 (158-223)||(19124532-19124596)
chr5 (99-222)||(4300544-4300667)
chr5 (96-271)||(19596065-19596246)
chr5 (166-271)||(41003918-41004028)
chr5 (112-223)||(12164317-12164432)
[»] chr4 (13 HSPs)
chr4 (97-271)||(3672286-3672467)
chr4 (98-271)||(28093095-28093275)
chr4 (98-271)||(6112642-6112821)
chr4 (98-271)||(21390955-21391134)
chr4 (98-271)||(49243827-49244006)
chr4 (98-268)||(7217780-7217957)
chr4 (98-268)||(44275721-44275897)
chr4 (100-229)||(35544972-35545102)
chr4 (98-271)||(46192371-46192551)
chr4 (98-271)||(45829257-45829436)
chr4 (7-80)||(52625909-52625982)
chr4 (160-219)||(51038833-51038893)
chr4 (158-219)||(54849858-54849919)
[»] chr8 (13 HSPs)
chr8 (98-271)||(42162610-42162790)
chr8 (106-271)||(44081792-44081964)
chr8 (98-271)||(30432351-30432530)
chr8 (98-271)||(31318817-31318997)
chr8 (98-268)||(43186042-43186218)
chr8 (98-271)||(18184565-18184744)
chr8 (98-271)||(10203676-10203856)
chr8 (98-271)||(12665356-12665537)
chr8 (98-271)||(36189228-36189406)
chr8 (98-268)||(33726026-33726203)
chr8 (13-67)||(41067306-41067360)
chr8 (12-80)||(2464017-2464086)
chr8 (157-261)||(42668841-42668950)
[»] chr3 (20 HSPs)
chr3 (98-271)||(34749897-34750077)
chr3 (98-271)||(44000001-44000181)
chr3 (100-271)||(36749418-36749596)
chr3 (98-268)||(51339783-51339957)
chr3 (99-271)||(22894692-22894870)
chr3 (97-271)||(36370336-36370517)
chr3 (98-225)||(48200749-48200877)
chr3 (98-223)||(46111943-46112069)
chr3 (97-261)||(21559583-21559754)
chr3 (98-271)||(30735495-30735674)
chr3 (98-197)||(29472901-29473000)
chr3 (98-271)||(38231305-38231484)
chr3 (98-223)||(39072278-39072398)
chr3 (98-253)||(39467101-39467262)
chr3 (193-271)||(29460672-29460756)
chr3 (193-271)||(29471524-29471608)
chr3 (137-271)||(20856193-20856330)
chr3 (98-261)||(50966152-50966310)
chr3 (98-261)||(51069287-51069445)
chr3 (157-261)||(53638157-53638267)
[»] chr2 (12 HSPs)
chr2 (98-271)||(33732581-33732760)
chr2 (101-271)||(3830900-3831074)
chr2 (98-271)||(44958125-44958305)
chr2 (98-271)||(16089834-16090012)
chr2 (98-223)||(37498862-37498990)
chr2 (120-268)||(14573010-14573165)
chr2 (98-268)||(37914236-37914412)
chr2 (98-271)||(36315573-36315753)
chr2 (5-80)||(31811178-31811253)
chr2 (98-213)||(6376238-6376353)
chr2 (157-219)||(24137151-24137213)
chr2 (98-223)||(41188835-41188961)
[»] scaffold0062 (1 HSPs)
scaffold0062 (98-271)||(6730-6910)
[»] chr6 (6 HSPs)
chr6 (98-271)||(3986905-3987084)
chr6 (98-271)||(3118046-3118226)
chr6 (98-268)||(15345659-15345833)
chr6 (99-268)||(14022949-14023124)
chr6 (98-229)||(13697628-13697759)
chr6 (98-229)||(24208504-24208635)
[»] chr1 (8 HSPs)
chr1 (98-268)||(34307137-34307314)
chr1 (98-271)||(46901734-46901914)
chr1 (100-271)||(39249864-39250042)
chr1 (98-271)||(2509036-2509216)
chr1 (100-223)||(19258674-19258797)
chr1 (98-222)||(28647420-28647544)
chr1 (166-219)||(9642933-9642987)
chr1 (166-219)||(29099886-29099939)
[»] scaffold0043 (1 HSPs)
scaffold0043 (98-271)||(87162-87342)


Alignment Details
Target: chr7 (Bit Score: 122; Significance: 1e-62; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 98 - 271
Target Start/End: Original strand, 26972202 - 26972382
Alignment:
Q  98 ggaaaaagataggtagacaccctttttcatacactttttatgtacaccccg-tgtattaagggtatttgagtaattttacatcatatcatcacccttttt 196  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  26972202 ggaaaaagataggtagacaccctttttcatacacttcttatgtacacccccatgtattaggggtatttgagtaattttacatcatatcatcacccttttt 26972301  T
Q  197 catctcttctttcaatgtttttgccacgtatca------tgtgtaggtgtaaaagggtgtatgccacctaacgtggttcat 271  Q
    ||||||| ||||||||||||||||||||| |||      ||||| |||||||||||||||||||||||||| |||||||||    
T  26972302 catctctcctttcaatgtttttgccacgtgtcataaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcat 26972382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 98 - 268
Target Start/End: Original strand, 45782659 - 45782836
Alignment:
Q  98 ggaaaaagataggtagacaccctttttcatacactttttatgtacac-cccgtgtattaagggtatttgagtaattttacatcatatcatcacccttttt 196  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||| ||| |||||||| |||||||||||||||||||||||||||||||    
T  45782659 ggaaaaagataggtagacacccttttttatacactttttatgtacactcccatgtgttaggggtattttagtaattttacatcatatcatcacccttttt 45782758  T
Q  197 catctcttctttcaatgtttttgccacgtatca------tgtgtaggtgtaaaagggtgtatgccacctaacgtggtt 268  Q
    ||||||||||||||||||||||| ||||| |||      ||||| ||||||||| | |||||||||||||| ||||||    
T  45782759 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaatgatgtatgccacctaaagtggtt 45782836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 98 - 271
Target Start/End: Complemental strand, 34108618 - 34108438
Alignment:
Q  98 ggaaaaagataggtagacaccctttttcatacactttttatgtacac-cccgtgtattaagggtatttgagtaattttacatcatatcatcacccttttt 196  Q
    ||||||||||||||| |||||||||||||||||||| |||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  34108618 ggaaaaagataggtaaacaccctttttcatacacttcttatgtacactcccatgtattaggggtatttgagtaattttacatcatatcatcacccttttt 34108519  T
Q  197 catctcttctttcaatgtttttgccacgtatc------atgtgtaggtgtaaaagggtgtatgccacctaacgtggttcat 271  Q
    ||||||||| ||||||||||||| ||  | ||      |||||| |||||||||||||||||| ||||||| |||||||||    
T  34108518 catctcttcattcaatgtttttgtcatatgtcacaaatatgtgtgggtgtaaaagggtgtatgtcacctaaggtggttcat 34108438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 98 - 261
Target Start/End: Original strand, 28307494 - 28307664
Alignment:
Q  98 ggaaaaagataggtagacaccctttttcatacactttttatgtacaccccg-tgtattaagggtatttgagtaattttacatcatatcatcacccttttt 196  Q
    ||||||||||||||||||| | |||||||||||| | |||||||||||||  | | |||||||||||| |||||||||||||||||||||||||||||||    
T  28307494 ggaaaaagataggtagacatcttttttcatacacctcttatgtacacccccatatgttaagggtattttagtaattttacatcatatcatcacccttttt 28307593  T
Q  197 catctcttctttcaatgtttttgccacgtatc------atgtgtaggtgtaaaagggtgtatgccacctaa 261  Q
    ||||||||||||||||||||||||||||| ||       ||||| ||||||||||||||||||||||||||    
T  28307594 catctcttctttcaatgtttttgccacgtgtcgcaaatgtgtgtgggtgtaaaagggtgtatgccacctaa 28307664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 98 - 261
Target Start/End: Original strand, 36346564 - 36346733
Alignment:
Q  98 ggaaaaagataggtagacaccctttttcatacactttttatgtacaccc-cgtgtattaagggtatttgagtaattttacatcatatcatcacccttttt 196  Q
    |||||||||||||||||||||||||||||||||| | |||||||||||| | ||| ||| |||||||| ||||||||||||||||||||||| |||||||    
T  36346564 ggaaaaagataggtagacaccctttttcatacacctcttatgtacaccctcatgtgttaggggtattttagtaattttacatcatatcatca-ccttttt 36346662  T
Q  197 catctcttctttcaatgtttttgccacgtatca------tgtgtaggtgtaaaagggtgtatgccacctaa 261  Q
    ||||||||||||||||||||||||||||| |||      ||| | ||||||||||||||||||||||||||    
T  36346663 catctcttctttcaatgtttttgccacgtgtcacaaatgtgtctgggtgtaaaagggtgtatgccacctaa 36346733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 100 - 261
Target Start/End: Complemental strand, 30887890 - 30887722
Alignment:
Q  100 aaaaagataggta-gacaccctttttcatacactttttatgtacaccccgtgtattaagggtatttgagtaattttacatcatatcatcaccctttttca 198  Q
    ||||||||| ||| ||||||||||||||||||||| |||| |||||||| |||||||  ||||||| |||||||||||||||||||||||||||||||||    
T  30887890 aaaaagatacgtaagacaccctttttcatacacttcttatatacaccccatgtattagaggtatttaagtaattttacatcatatcatcaccctttttca 30887791  T
Q  199 tctcttctttcaatgtttttgccacgtatca------tgtgtaggtgtaaaagggtgtatgccacctaa 261  Q
    ||||||| |||||||||||||| |||| |||      | ||| |||||||||| |||||||||||||||    
T  30887790 tctcttcattcaatgtttttgctacgtgtcacaaatgtatgtgggtgtaaaagtgtgtatgccacctaa 30887722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 98 - 271
Target Start/End: Complemental strand, 31148481 - 31148302
Alignment:
Q  98 ggaaaaagataggtagacaccctttttcatacactttttatgtacaccccgtgtattaagggtatttgagtaattttacatcatatcatcaccctttttc 197  Q
    |||||||||||||||||||| ||||||||||||| | ||||  ||||||| | | ||| |  ||||| |||||||||||||||||||||||||| |||||    
T  31148481 ggaaaaagataggtagacactctttttcatacacctcttatacacaccccatatgttaggcttattttagtaattttacatcatatcatcacccattttc 31148382  T
Q  198 atctcttctttcaatgtttttgccacgtatca------tgtgtaggtgtaaaagggtgtatgccacctaacgtggttcat 271  Q
    ||||||||||||||||||||||||| || |||      ||||| ||||||||||||||||||||||||||  ||||||||    
T  31148381 atctcttctttcaatgtttttgccatgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcat 31148302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 98 - 268
Target Start/End: Original strand, 7699882 - 7700059
Alignment:
Q  98 ggaaaaagataggtagacaccctttttcatacactttttatgtacaccc-cgtgtattaagggtatttgagtaattttacatcatatcatcacccttttt 196  Q
    ||||||||||||||| |||||||||||||||||| | |||| ||||||  | ||| ||| |||||||| |||||||||| |||||||||||| |||||||    
T  7699882 ggaaaaagataggtaaacaccctttttcatacacctcttatatacaccttcatgtgttatgggtattttagtaattttatatcatatcatcatccttttt 7699981  T
Q  197 catctcttctttcaatgtttttgccacgtatca------tgtgtaggtgtaaaagggtgtatgccacctaacgtggtt 268  Q
     |||||||||||||||||||||||||||| |||      ||||| ||||||||||||||||||||| |||| ||||||    
T  7699982 tatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccatctaaggtggtt 7700059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 98 - 268
Target Start/End: Original strand, 7700080 - 7700257
Alignment:
Q  98 ggaaaaagataggtagacaccctttttcatacactttttatgtacaccc-cgtgtattaagggtatttgagtaattttacatcatatcatcacccttttt 196  Q
    ||||||||||||||| |||||||||||||||||| | |||| ||||||  | ||| ||| |||||||| |||||||||| |||||||||||| |||||||    
T  7700080 ggaaaaagataggtaaacaccctttttcatacacctcttatatacaccttcatgtgttatgggtattttagtaattttatatcatatcatcatccttttt 7700179  T
Q  197 catctcttctttcaatgtttttgccacgtatca------tgtgtaggtgtaaaagggtgtatgccacctaacgtggtt 268  Q
     |||||||||||||||||||||||||||| |||      ||||| ||||||||||||||||||||| |||| ||||||    
T  7700180 tatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccatctaaggtggtt 7700257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 98 - 268
Target Start/End: Original strand, 7700278 - 7700455
Alignment:
Q  98 ggaaaaagataggtagacaccctttttcatacactttttatgtacaccc-cgtgtattaagggtatttgagtaattttacatcatatcatcacccttttt 196  Q
    ||||||||||||||| |||||||||||||||||| | |||| ||||||  | ||| ||| |||||||| |||||||||| |||||||||||| |||||||    
T  7700278 ggaaaaagataggtaaacaccctttttcatacacctcttatatacaccttcatgtgttatgggtattttagtaattttatatcatatcatcatccttttt 7700377  T
Q  197 catctcttctttcaatgtttttgccacgtatca------tgtgtaggtgtaaaagggtgtatgccacctaacgtggtt 268  Q
     |||||||||||||||||||||||||||| |||      ||||| ||||||||||||||||||||| |||| ||||||    
T  7700378 tatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccatctaaggtggtt 7700455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 98 - 268
Target Start/End: Original strand, 7700476 - 7700653
Alignment:
Q  98 ggaaaaagataggtagacaccctttttcatacactttttatgtacaccc-cgtgtattaagggtatttgagtaattttacatcatatcatcacccttttt 196  Q
    ||||||||||||||| |||||||||||||||||| | |||| ||||||  | ||| ||| |||||||| |||||||||| |||||||||||| |||||||    
T  7700476 ggaaaaagataggtaaacaccctttttcatacacctcttatatacaccttcatgtgttatgggtattttagtaattttatatcatatcatcatccttttt 7700575  T
Q  197 catctcttctttcaatgtttttgccacgtatca------tgtgtaggtgtaaaagggtgtatgccacctaacgtggtt 268  Q
     |||||||||||||||||||||||||||| |||      ||||| ||||||||||||||||||||| |||| ||||||    
T  7700576 tatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccatctaaggtggtt 7700653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 98 - 225
Target Start/End: Complemental strand, 34828256 - 34828129
Alignment:
Q  98 ggaaaaagataggtagacaccctttttcatacactttttatgtacaccccgtgtattaagggtatttgagtaattttacatcatatcatcaccctttttc 197  Q
    ||||||||||||||||||| ||||||||||||||   ||||| ||||||| | | ||| |||||||| ||||||||||||||||||||||| |  |||||    
T  34828256 ggaaaaagataggtagacatcctttttcatacaccacttatgcacaccccatatgttaggggtattttagtaattttacatcatatcatcatcacttttc 34828157  T
Q  198 atctcttctttcaatgtttttgccacgt 225  Q
    ||||||||||||||||||||||||||||    
T  34828156 atctcttctttcaatgtttttgccacgt 34828129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 98 - 268
Target Start/End: Complemental strand, 13108338 - 13108163
Alignment:
Q  98 ggaaaaagataggtagacaccctttttcatacactttttatgtacaccccgtgtattaagggtatttgagtaattttacatcatatcatcaccctttttc 197  Q
    ||||||||||||||||||||||||||| |||||| ||| ||||||||| | ||| ||| |||||||| |||||||| |||||| ||| ||||||  ||||    
T  13108338 ggaaaaagataggtagacacccttttttatacacctttcatgtacacctcatgtgttaggggtattttagtaatttcacatcacatcctcaccc-ctttc 13108240  T
Q  198 atctcttctttcaatgtttttgccacgtatca------tgtgtaggtgtaaaagggtgtatgccacctaacgtggtt 268  Q
    |||||||||||||| ||||||||||| | |||      ||||| |||||||||||||||||||| ||||| ||||||    
T  13108239 atctcttctttcaacgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccgcctaaggtggtt 13108163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 98 - 271
Target Start/End: Original strand, 42220963 - 42221142
Alignment:
Q  98 ggaaaaagataggtagacaccctttttcatacactttttatgtacaccccgtgtattaagggtatttg-agtaattttacatcatatcatcacccttttt 196  Q
    ||||||||||||||||||||| ||||||||||||   |||||||||| || ||| ||| ||||||||  |||||||| ||||||||||||||||| ||||    
T  42220963 ggaaaaagataggtagacacc-tttttcatacaccacttatgtacactccatgtgttaggggtatttttagtaatttaacatcatatcatcacccctttt 42221061  T
Q  197 catctcttctttcaatgtttttgccacgtatca------tgtgtaggtgtaaaagggtgtatgccacctaacgtggttcat 271  Q
     || ||||||||||||||||||||||||| |||      ||||| |||||||||  ||||||||||||||| |||||||||    
T  42221062 tatatcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaaaagtgtatgccacctaaggtggttcat 42221142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 98 - 223
Target Start/End: Original strand, 5811163 - 5811288
Alignment:
Q  98 ggaaaaagataggtagacaccctttttcatacactttttatgtacaccccgtgtattaagggtatttgagtaattttacatcatatcatcaccctttttc 197  Q
    ||||||||||||||||||||||||||| |||||| |   ||||||||| | ||| ||| |||||||| |||||||| |||||| ||| |||||| |||||    
T  5811163 ggaaaaagataggtagacacccttttttatacacctcccatgtacacctcatgtgttaggggtattttagtaatttcacatcacatcctcaccccttttc 5811262  T
Q  198 atctcttctttcaatgtttttgccac 223  Q
    ||||||||||||||||||||||||||    
T  5811263 atctcttctttcaatgtttttgccac 5811288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 100 - 271
Target Start/End: Original strand, 21807324 - 21807501
Alignment:
Q  100 aaaaagataggtagacaccctttttcatacactttttatgtacaccccgtgtattaagggtatttgagtaattttacatcatatcatcaccctttttcat 199  Q
    |||||||||||| |||| ||||||| |||||||| | || ||||||||  || ||| |||||||| |||||||| |||| | ||||||| || |||||||    
T  21807324 aaaaagataggttgacaaccttttttatacacttctcatatacaccccacgtgttaggggtattttagtaatttcacataacatcatcatccattttcat 21807423  T
Q  200 ctcttctttcaatgtttttgccacgtatca------tgtgtaggtgtaaaagggtgtatgccacctaacgtggttcat 271  Q
    ||||||||||||| |||||||||| |||||      ||||| ||||||||| ||||||||||| |||| |||||||||    
T  21807424 ctcttctttcaatatttttgccacatatcacaaatttgtgtgggtgtaaaatggtgtatgccatctaaggtggttcat 21807501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 98 - 195
Target Start/End: Original strand, 29953571 - 29953669
Alignment:
Q  98 ggaaaaagataggtagacaccctttttcatacactttttatgtacac-cccgtgtattaagggtatttgagtaattttacatcatatcatcaccctttt 195  Q
    |||||||||||||||||||||||||||||||||||| ||||||| ||  || ||||||| || ||||||||||||||||||||||||||||||||||||    
T  29953571 ggaaaaagataggtagacaccctttttcatacacttcttatgtagacttccatgtattagggatatttgagtaattttacatcatatcatcaccctttt 29953669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 98 - 260
Target Start/End: Complemental strand, 23980322 - 23980154
Alignment:
Q  98 ggaaaaagataggtagacaccctttttcatacactttttatgtacaccccgtgtattaagggtatttgagtaattttacatcatatcatcaccctttttc 197  Q
    ||||||||||||||||||| ||||||| ||||| |||  ||||||| | | | | |||  ||||||| |||||||| |||||| ||| |||||| |||||    
T  23980322 ggaaaaagataggtagacatccttttttatacattttccatgtacatctcatatgttagaggtattttagtaatttcacatcacatcctcaccccttttc 23980223  T
Q  198 atctcttctttcaatgtttttgccacgtatca------tgtgtaggtgtaaaagggtgtatgccaccta 260  Q
    |||||||||||||||||||||||||| | |||      ||||| |||||||||||||||||||||||||    
T  23980222 atctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccaccta 23980154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 98 - 219
Target Start/End: Complemental strand, 46475216 - 46475094
Alignment:
Q  98 ggaaaaagataggtagacaccctttttcatacactttttatgtacaccccgtgtattaaggg-tatttgagtaattttacatcatatcatcacccttttt 196  Q
    ||||||||||||||||||||||||||| |||||| | | ||||||| | | ||| ||| ||| ||||| |||||||| |||||| ||| |||||| ||||    
T  46475216 ggaaaaagataggtagacacccttttttatacacctctcatgtacatctcatgtgttatggggtattttagtaatttcacatcacatcgtcacccctttt 46475117  T
Q  197 catctcttctttcaatgtttttg 219  Q
    |||||||||||||||||||||||    
T  46475116 catctcttctttcaatgtttttg 46475094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 98 - 261
Target Start/End: Complemental strand, 36957619 - 36957451
Alignment:
Q  98 ggaaaaagataggtagacaccctttttcatacactttttatgtacaccccgtgtattaagggtatttgagtaattttacatcatatcatcaccctttttc 197  Q
    ||||||||||||||||||||  ||||| |||||| ||| || |||||||  ||| ||  |||||||| ||||||||||||| | || |||| || |||||    
T  36957619 ggaaaaagataggtagacacaattttttatacacctttcatatacaccca-tgtgttgggggtattttagtaattttacattacattatcatccattttc 36957521  T
Q  198 atctcttctttcaatgtttttgccacgtatc------atgtgtaggtgtaaaagggtgtatgccacctaa 261  Q
    |||||||||| |||| |||||| ||||| ||      |||| | | ||||||||||||||||||||||||    
T  36957520 atctcttcttacaatatttttgtcacgtgtcacaaatatgtatggatgtaaaagggtgtatgccacctaa 36957451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 6 - 78
Target Start/End: Complemental strand, 6244995 - 6244923
Alignment:
Q  6 agagagatgaattgataaaagagaaaagaaatattaataaaaaatgtcatttgaagtggtatatgagtggtat 78  Q
    ||||| || |||||||||||| ||| |||||||| |||||||||| |||||||||||| ||||| ||||||||    
T  6244995 agagaaataaattgataaaagggaagagaaatatgaataaaaaatatcatttgaagtgatatataagtggtat 6244923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 160 - 260
Target Start/End: Complemental strand, 15020408 - 15020305
Alignment:
Q  160 tatttgagtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgccacgtatc----atgtgtaggtgtaaaagggtgtatgcc 255  Q
    ||||| |||||||| |||||||||| |||||| ||| | ||||||||||||||||||||||||  | ||    |||||| ||||||||||| ||||||||    
T  15020408 tattttagtaatttcacatcatatcttcaccccttt-cgtctcttctttcaatgtttttgccatatgtcacaaatgtgtgggtgtaaaaggttgtatgcc 15020310  T
Q  256 accta 260  Q
    |||||    
T  15020309 accta 15020305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 160 - 222
Target Start/End: Original strand, 20086690 - 20086752
Alignment:
Q  160 tatttgagtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgcca 222  Q
    ||||| |||||||| |||||| |||||||||| |||| ||||||||||| |||||||||||||    
T  20086690 tattttagtaatttcacatcacatcatcacccctttttatctcttcttttaatgtttttgcca 20086752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 173
Target Start/End: Original strand, 42950036 - 42950111
Alignment:
Q  98 ggaaaaagataggtagacaccctttttcatacactttttatgtacaccccgtgtattaagggtatttgagtaattt 173  Q
    ||||||||||||||||||||||||||| |||||| |   ||||||||||| ||| | | |||||||| ||||||||    
T  42950036 ggaaaaagataggtagacacccttttttatacacctagcatgtacaccccatgtttcaggggtattttagtaattt 42950111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 118; Significance: 3e-60; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 98 - 271
Target Start/End: Complemental strand, 2237468 - 2237288
Alignment:
Q  98 ggaaaaagataggtagacaccctttttcatacactttttatgtacaccccgt-gtattaagggtatttgagtaattttacatcatatcatcacccttttt 196  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||   |||||| ||||||||||||||||||||||||||||||||||||||||    
T  2237468 ggaaaaagataggtagacaccctttttcatacacttcttatgtacacccccaagtattaggggtatttgagtaattttacatcatatcatcacccttttt 2237369  T
Q  197 catctcttctttcaatgtttttgccacgtatc------atgtgtaggtgtaaaagggtgtatgccacctaacgtggttcat 271  Q
    ||||||||||||||||||||||||||||| ||      |||||| |||||||||||||||||| ||||||| |||||||||    
T  2237368 catctcttctttcaatgtttttgccacgtgtcacaaatatgtgtgggtgtaaaagggtgtatgtcacctaaggtggttcat 2237288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 98 - 271
Target Start/End: Complemental strand, 14831736 - 14831556
Alignment:
Q  98 ggaaaaagataggtagacaccctttttcatacactttttatgtacaccccgt-gtattaagggtatttgagtaattttacatcatatcatcacccttttt 196  Q
    ||||||||||||||| |||||||||||||||||||| |||||||||||||   |||||| |||||||||| |||||||||||||||||||||||||||||    
T  14831736 ggaaaaagataggtaaacaccctttttcatacacttcttatgtacacccctacgtattaggggtatttgaataattttacatcatatcatcacccttttt 14831637  T
Q  197 catctcttctttcaatgtttttgccacgtatca------tgtgtaggtgtaaaagggtgtatgccacctaacgtggttcat 271  Q
    |||||||||||||||||||||||||||||||||      ||||| |||||||||||||||||||||||||| |||||||||    
T  14831636 catctcttctttcaatgtttttgccacgtatcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcat 14831556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 98 - 271
Target Start/End: Complemental strand, 39371119 - 39370939
Alignment:
Q  98 ggaaaaagataggtagacaccctttttcatacactttttatgtacaccccg-tgtattaagggtatttgagtaattttacatcatatcatcacccttttt 196  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  39371119 ggaaaaagataggtagacaccctttttcatacacttcttatgtacacccccatgtattaggggtatttgagtaattttacatcatatcatcacccttttt 39371020  T
Q  197 catctcttctttcaatgtttttgccacgtatca------tgtgtaggtgtaaaagggtgtatgccacctaacgtggttcat 271  Q
    ||||||||||||||||||||||| ||||| |||      ||||| ||||||||||||||||||||| |||| |||||||||    
T  39371019 catctcttctttcaatgtttttggcacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccatctaaggtggttcat 39370939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 97 - 271
Target Start/End: Complemental strand, 13347321 - 13347140
Alignment:
Q  97 cggaaaaagataggtagacaccctttttcatacactttttatgtacaccc-cgtgtattaagggtatttgagtaattttacatcatatcatcaccctttt 195  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||| |||||||||||||||| |||||||||||||||| |||||    
T  13347321 cggaaaaagataggtagacaccctttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcactctttt 13347222  T
Q  196 tcatctcttctttcaatgtttttgccacgtatca------tgtgtaggtgtaaaagggtgtatgccacctaacgtggttcat 271  Q
    |||||| ||||||||||||||||||||||| |||      ||||| |||||||||||||||||||||||||| |||||||||    
T  13347221 tcatctattctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcat 13347140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 98 - 268
Target Start/End: Original strand, 40887941 - 40888118
Alignment:
Q  98 ggaaaaagataggtagacaccctttttcatacactttttatgtacaccccg-tgtattaagggtatttgagtaattttacatcatatcatcacccttttt 196  Q
    |||||||||||||||||||||||||||||||||| | |||||||||||||  | |||||  ||||||| |||||||||||||||||||| ||||||||||    
T  40887941 ggaaaaagataggtagacaccctttttcatacacctcttatgtacacccccatctattagaggtattttagtaattttacatcatatcaccacccttttt 40888040  T
Q  197 catctcttctttcaatgtttttgccacgtatca------tgtgtaggtgtaaaagggtgtatgccacctaacgtggtt 268  Q
    ||||||||||||||||||||||||||||| |||      ||||| |||||||||| ||||||||||||||| ||||||    
T  40888041 catctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagagtgtatgccacctaaggtggtt 40888118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 114 - 271
Target Start/End: Original strand, 9408054 - 9408218
Alignment:
Q  114 acaccctttttcatacactttttatgtacaccccg-tgtattaagggtatttgagtaattttacatcatatcatcaccctttttcatctcttctttcaat 212  Q
    ||||| |||||||||||||| |||||||||||||  | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9408054 acaccatttttcatacacttcttatgtacacccccatatattaggggtatttgagtaattttacatcatatcatcaccctttttcatctcttctttcaat 9408153  T
Q  213 gtttttgccacgtatca------tgtgtaggtgtaaaagggtgtatgccacctaacgtggttcat 271  Q
    ||||||||||||| |||      |||||  ||||||||||| ||||| ||||| | |||||||||    
T  9408154 gtttttgccacgtgtcacaaatgtgtgtgagtgtaaaagggcgtatgtcacctgaggtggttcat 9408218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 98 - 230
Target Start/End: Complemental strand, 31800749 - 31800617
Alignment:
Q  98 ggaaaaagataggtagacaccctttttcatacactttttatgtacaccccgtgtattaagggtatttgagtaattttacatcatatcatcaccctttttc 197  Q
    ||||||||||||| |||||||||||||||||||| | || |||||||||| | | ||| |||||||| |||||||||||||||||||||||||| |||||    
T  31800749 ggaaaaagataggcagacaccctttttcatacacctcttgtgtacaccccatatgttaggggtattttagtaattttacatcatatcatcaccccttttc 31800650  T
Q  198 atctcttctttcaatgtttttgccacgtatcat 230  Q
    |||| |||||||||| |||||||||||| ||||    
T  31800649 atcttttctttcaatatttttgccacgtgtcat 31800617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 98 - 271
Target Start/End: Original strand, 1815619 - 1815795
Alignment:
Q  98 ggaaaaagataggtagacaccctttttcatacactttttatgtacaccccgtgtattaagggtatttgagtaattttacatcatatcatcaccctttttc 197  Q
    ||||||||||||||||||||| ||||||||| |      ||||||||||  ||| ||| |||||||| |||||||||||||||||||||||||| |||||    
T  1815619 ggaaaaagataggtagacaccttttttcataaagaa---atgtacaccctatgtgttaggggtattttagtaattttacatcatatcatcaccccttttc 1815715  T
Q  198 atctcttctttcaatgtttttgccacgtatc------atgtgtaggtgtaaaagggtgtatgccacctaacgtggttcat 271  Q
    |||||||||||||||||||||||||||| ||      |||||| | |||||||||||||||| |||||||  ||||||||    
T  1815716 atctcttctttcaatgtttttgccacgtgtcacaaatatgtgtggatgtaaaagggtgtatgtcacctaagatggttcat 1815795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 101 - 271
Target Start/End: Original strand, 27553376 - 27553552
Alignment:
Q  101 aaaagataggtagacaccctttttcatacactttttatgtacaccccgtgtattaagggtatttgagtaattttacatcatatcatcaccctttttcatc 200  Q
    |||| |||| ||||||||||||||||||||| | ||||||||||||  ||| ||| | |||||| ||||||||||||||| || |||||| |||||| ||    
T  27553376 aaaaaatagatagacaccctttttcatacacctcttatgtacaccctatgtgttaggagtattttagtaattttacatcagataatcaccatttttcttc 27553475  T
Q  201 tcttctttcaatgtttttgccacgtatca------tgtgtaggtgtaaaagggtgtatgccacctaacgtggttcat 271  Q
    ||||||||||||||||||||||||| |||      ||||| ||||||||| ||| ||||||||||||  ||||||||    
T  27553476 tcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaatggtatatgccacctaaaatggttcat 27553552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 98 - 218
Target Start/End: Complemental strand, 42683791 - 42683670
Alignment:
Q  98 ggaaaaagataggtagacaccctttttcatacactttttatgtacaccccg-tgtattaagggtatttgagtaattttacatcatatcatcacccttttt 196  Q
    |||||||||||| |||||| |||||||||||||| | |||||||||||||  | ||||| |||||||| |||||||||||||||||||| || |||||||    
T  42683791 ggaaaaagatagatagacatcctttttcatacacctcttatgtacacccccatatattaggggtattttagtaattttacatcatatcaccatccttttt 42683692  T
Q  197 catctcttctttcaatgttttt 218  Q
    ||||||||||||||||||||||    
T  42683691 catctcttctttcaatgttttt 42683670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 191 - 271
Target Start/End: Original strand, 33404529 - 33404615
Alignment:
Q  191 ctttttcatctcttctttcaatgtttttgccacgtatca------tgtgtaggtgtaaaagggtgtatgccacctaacgtggttcat 271  Q
    ||||||||||||||||||||||||||||||||||| |||      ||||| |||||||||| ||||||| ||||||| |||||||||    
T  33404529 ctttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagtgtgtatggcacctaaggtggttcat 33404615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 157 - 219
Target Start/End: Complemental strand, 17225449 - 17225387
Alignment:
Q  157 gggtatttgagtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttg 219  Q
    |||||||| |||||||| |||||| |||||||||  |||||||||||||||||||||||||||    
T  17225449 gggtattttagtaatttcacatcacatcatcacctcttttcatctcttctttcaatgtttttg 17225387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 158 - 223
Target Start/End: Original strand, 19124532 - 19124596
Alignment:
Q  158 ggtatttgagtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgccac 223  Q
    ||||||| ||||||||||||||||||||||||  | ||||||||||||||| ||||||||||||||    
T  19124532 ggtattttagtaattttacatcatatcatcacattctttcatctcttcttt-aatgtttttgccac 19124596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 99 - 222
Target Start/End: Original strand, 4300544 - 4300667
Alignment:
Q  99 gaaaaagataggtagacaccctttttcatacactttttatgtacaccccgtgtattaagggtatttgagtaattttacatcatatcatcaccctttttca 198  Q
    ||||||||| | |||||| ||||||| |||||  | | ||||||||| | ||| ||| || ||||| | |||||| |||||| |||| |||| ||||| |    
T  4300544 gaaaaagattgatagacatccttttttatacatctctcatgtacacctcatgtgttagggatattttaataatttcacatcacatcaccaccatttttta 4300643  T
Q  199 tctcttctttcaatgtttttgcca 222  Q
    |||||| |||||||||||||||||    
T  4300644 tctcttatttcaatgtttttgcca 4300667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 96 - 271
Target Start/End: Original strand, 19596065 - 19596246
Alignment:
Q  96 acggaaaaagataggtagacaccctttttc-atacactttttatgtacaccccgtgtattaagggtatttgagtaattttacatcatatcatcacccttt 194  Q
    ||||||||||||||||||||| |||||||  | | || | ||||||||||||| ||| | | ||||| || ||| |||| |||| | || |||||  |||    
T  19596065 acggaaaaagataggtagacatccttttttgaaatacctcttatgtacaccccatgtgtcaggggtagtttagtcatttcacattacattatcactattt 19596164  T
Q  195 ttcatctcttctttcaatgtttttgccacgtatca------tgtgtaggtgtaaaagggtgtatgccacctaacgtggttcat 271  Q
    | || |||||||||||||||||||||||| | |||      || || | ||||||| |||||||||||||||| |||||||||    
T  19596165 t-cacctcttctttcaatgtttttgccacatgtcacaaatgtgcgtggatgtaaaaaggtgtatgccacctaaggtggttcat 19596246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 271
Target Start/End: Original strand, 41003918 - 41004028
Alignment:
Q  166 agtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgccacgtatcat----gtgtagg--tgtaaaagggtgtatgccacct 259  Q
    ||||||||||||||| ||||||| || |||| || |||| ||||||| |||||||||| | ||||    ||||| |  ||||||||||||||||||||||    
T  41003918 agtaattttacatcacatcatcatccctttttatatctt-tttcaatatttttgccacatgtcataaatgtgtatgagtgtaaaagggtgtatgccacct 41004016  T
Q  260 aacgtggttcat 271  Q
    || |||||||||    
T  41004017 aaagtggttcat 41004028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 112 - 223
Target Start/End: Complemental strand, 12164432 - 12164317
Alignment:
Q  112 agacaccctttttcatacactttttatgtacacc-ccgtgtattaagggtatttgagtaattttacatcatatcatcaccctttttcatctcttctt--- 207  Q
    ||||||||||||| || ||| | ||||||||||| || ||||  | ||| |||| |||||||| |||||| | ||||||||| |  |||||||||||       
T  12164432 agacacccttttttatgcacctcttatgtacacctccatgtagcaggggcattttagtaatttcacatcacaccatcaccctctcccatctcttcttctt 12164333  T
Q  208 tcaatgtttttgccac 223  Q
    ||||||||||||||||    
T  12164332 tcaatgtttttgccac 12164317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 115; Significance: 2e-58; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 97 - 271
Target Start/End: Complemental strand, 3672467 - 3672286
Alignment:
Q  97 cggaaaaagataggtagacaccctttttcatacactttttatgtacaccc-cgtgtattaagggtatttgagtaattttacatcatatcatcaccctttt 195  Q
    |||||||||||||||||| |||||||||||||||||| |||||||||||| | ||||||| |||||||||||||||| ||||||||||||||||||||||    
T  3672467 cggaaaaagataggtagataccctttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcaccctttt 3672368  T
Q  196 tcatctcttctttcaatgtttttgccacgtatca------tgtgtaggtgtaaaagggtgtatgccacctaacgtggttcat 271  Q
    |||||||||||||||||||||||||||||| |||      ||||| | |||||||||||||||||||||||| |||||||||    
T  3672367 tcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtggatgtaaaagggtgtatgccacctaaggtggttcat 3672286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 98 - 271
Target Start/End: Original strand, 28093095 - 28093275
Alignment:
Q  98 ggaaaaagataggtagacaccctttttcatacactttttatgtacaccccg-tgtattaagggtatttgagtaattttacatcatatcatcacccttttt 196  Q
    ||||||||||||||||||| |||||||||||||||| |||||||||||||  ||||||| ||||||||||||| ||||||||||||||||||||||||||    
T  28093095 ggaaaaagataggtagacatcctttttcatacacttcttatgtacacccccatgtattaggggtatttgagtatttttacatcatatcatcacccttttt 28093194  T
Q  197 catctcttctttcaatgtttttgccacgtatca------tgtgtaggtgtaaaagggtgtatgccacctaacgtggttcat 271  Q
    ||||||| ||||||||||||||||||||| |||      ||||| |||||||||||||||||||||||||| |||||||||    
T  28093195 catctctcctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcat 28093275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 98 - 271
Target Start/End: Complemental strand, 6112821 - 6112642
Alignment:
Q  98 ggaaaaagataggtagacaccctttttcatacactttttatgtacaccccgtgtattaagggtatttgagtaattttacatcatatcatcaccctttttc 197  Q
    |||||||||||||||||||| ||||||||||||||| |||||||||| || ||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  6112821 ggaaaaagataggtagacactctttttcatacacttcttatgtacactccatgtattaggggtatttgagtaattttacatcatatcatcatcctttttc 6112722  T
Q  198 atctcttctttcaatgtttttgccacgtatc------atgtgtaggtgtaaaagggtgtatgccacctaacgtggttcat 271  Q
    |||||||||||||||||||||||||||| ||      |||||| ||||||||| ||||||||||| |||| |||||||||    
T  6112721 atctcttctttcaatgtttttgccacgtgtcacaaatatgtgtgggtgtaaaatggtgtatgccatctaaggtggttcat 6112642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 98 - 271
Target Start/End: Original strand, 21390955 - 21391134
Alignment:
Q  98 ggaaaaagataggtagacaccctttttcatacactttttatgtacaccccgtgtattaagggtatttgagtaattttacatcatatcatcaccctttttc 197  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||| | ||| ||| |||||||| ||||||||||||||||||  |||| | |||||    
T  21390955 ggaaaaagataggtagacaccctttttcatacaccttttatgtacacctcatgtgttaggggtattttagtaattttacatcatatattcactcattttc 21391054  T
Q  198 atctcttctttcaatgtttttgccacgtatca------tgtgtaggtgtaaaagggtgtatgccacctaacgtggttcat 271  Q
    ||||||||||||||| |||||||||||| |||      ||||| ||||||||||||||||||||| |||| |||||||||    
T  21391055 atctcttctttcaatatttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccatctaaggtggttcat 21391134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 98 - 271
Target Start/End: Complemental strand, 49244006 - 49243827
Alignment:
Q  98 ggaaaaagataggtagacaccctttttcatacactttttatgtacaccccgtgtattaagggtatttgagtaattttacatcatatcatcaccctttttc 197  Q
    ||||||||||| ||||||| |||||||||||||| | |||||||||| || ||||||| |||||||| ||||||||||||||||||||||||  |||||     
T  49244006 ggaaaaagatatgtagacatcctttttcatacacctcttatgtacactccatgtattaggggtattttagtaattttacatcatatcatcactttttttt 49243907  T
Q  198 atctcttctttcaatgtttttgccacgtatca------tgtgtaggtgtaaaagggtgtatgccacctaacgtggttcat 271  Q
    |||||||||||||||||||||||||| | |||      ||||| | |||||||||||||||||||||||| |||||||||    
T  49243906 atctcttctttcaatgtttttgccacatgtcacaaatgtgtgtggatgtaaaagggtgtatgccacctaaggtggttcat 49243827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 98 - 268
Target Start/End: Complemental strand, 7217957 - 7217780
Alignment:
Q  98 ggaaaaagataggtagacaccctttttcatacactttttatgtacaccc-cgtgtattaagggtatttgagtaattttacatcatatcatcacccttttt 196  Q
    ||||||||||||||| |||||||||||||||||| | |||||||||||| | ||| |||  ||||||| |||||||||||||||||||||||||||||||    
T  7217957 ggaaaaagataggtaaacaccctttttcatacacctcttatgtacaccctcatgtgttataggtattttagtaattttacatcatatcatcacccttttt 7217858  T
Q  197 catctcttctttcaatgtttttgccacgtatca------tgtgtaggtgtaaaagggtgtatgccacctaacgtggtt 268  Q
     ||||||| ||| |||||||||||||||| |||      ||||||||||| |||||||||||||||||||| ||||||    
T  7217857 tatctcttattttaatgtttttgccacgtgtcacaaatgtgtgtaggtgttaaagggtgtatgccacctaaggtggtt 7217780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 98 - 268
Target Start/End: Complemental strand, 44275897 - 44275721
Alignment:
Q  98 ggaaaaagataggtagacaccctttttcatacactttttatgtacaccccgtgtattaagggtatttgagtaattttacatcatatcatcaccctttttc 197  Q
    |||||||||||| ||||||||||||||||||||| | ||||||||||||| ||| ||| |||||||| |||||||||||||||||||||||||||||||     
T  44275897 ggaaaaagatagatagacaccctttttcatacacctcttatgtacaccccatgtgttaggggtattttagtaattttacatcatatcatcacccttttta 44275798  T
Q  198 atctcttctttcaatgtttttgccacgtatca------tgtgtaggtgtaaaagggtgtatgccacctaacgtggtt 268  Q
    ||||||||||||||| |||||| ||||| |||      |||||  |||||||| ||| |||||||||||| ||||||    
T  44275797 atctcttctttcaatatttttggcacgtgtcacaaatgtgtgtgagtgtaaaatggtatatgccacctaaggtggtt 44275721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 100 - 229
Target Start/End: Complemental strand, 35545102 - 35544972
Alignment:
Q  100 aaaaagataggtagacaccctttttcatacactttttatgtacaccccgtgtattaagggtatttg-agtaattttacatcatatcatcaccctttttca 198  Q
    ||||||||||||||||||||||||||||||||   |||||||||| || ||| ||| ||||||||  |||||||||||||||||||||||||| |||| |    
T  35545102 aaaaagataggtagacaccctttttcatacaccacttatgtacactccatgtgttaggggtatttttagtaattttacatcatatcatcaccccttttta 35545003  T
Q  199 tctcttctttcaatgtttttgccacgtatca 229  Q
    | |||||||||||||||||||||||||||||    
T  35545002 tatcttctttcaatgtttttgccacgtatca 35544972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 98 - 271
Target Start/End: Complemental strand, 46192551 - 46192371
Alignment:
Q  98 ggaaaaagataggtagacaccctttttc-atacactttttatgtacaccccgtgtattaagggtatttgagtaattttacatcatatcatcacccttttt 196  Q
    |||||||||||||||||||||||||||  |||||| | ||||||||||||| ||||  | |||||||| | | |||| |||||| || ||||||| ||||    
T  46192551 ggaaaaagataggtagacacccttttttgatacacctcttatgtacaccccatgtaccaggggtattttaatcatttcacatcacattatcacccctttt 46192452  T
Q  197 catctcttctttcaatgtttttgccacgtatca------tgtgtaggtgtaaaagggtgtatgccacctaacgtggttcat 271  Q
     |||||||||||||||||||||||||| | |||      ||||| |||||||||||||||||||||||||| ||| |||||    
T  46192451 tatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtgattcat 46192371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 98 - 271
Target Start/End: Original strand, 45829257 - 45829436
Alignment:
Q  98 ggaaaaagataggtagacaccctttttc-atacactttttatgtacaccccgtgtattaagggtatttgagtaattttacatcatatcatcacccttttt 196  Q
    |||||||||||||||||||||||||||  |||||| ||| ||||||||||| | |   | |||||||| | | |||| |||||| || ||||||| ||||    
T  45829257 ggaaaaagataggtagacacccttttttgatacaccttt-atgtacaccccatatgccaggggtattttaatcatttcacatcacattatcacccctttt 45829355  T
Q  197 catctcttctttcaatgtttttgccacgtatca------tgtgtaggtgtaaaagggtgtatgccacctaacgtggttcat 271  Q
     |||||||||||||||||||||||||| | |||      ||||| ||||||||| |||||||| ||||||| |||||||||    
T  45829356 tatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaaaggtgtatgtcacctaaagtggttcat 45829436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 7 - 80
Target Start/End: Complemental strand, 52625982 - 52625909
Alignment:
Q  7 gagagatgaattgataaaagagaaaagaaatattaataaaaaatgtcatttgaagtggtatatgagtggtatgg 80  Q
    |||| ||||||||||||||| ||| |||||||| |||||||||||||||||| |||||||||||||||||||||    
T  52625982 gagaaatgaattgataaaagggaagagaaatataaataaaaaatgtcatttggagtggtatatgagtggtatgg 52625909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 219
Target Start/End: Complemental strand, 51038893 - 51038833
Alignment:
Q  160 tatttgagtaattttacatcatatcatcaccct-ttttcatctcttctttcaatgtttttg 219  Q
    ||||| |||||||| |||||| | ||||||||  |||||||||||||||||||||||||||    
T  51038893 tattttagtaatttcacatcacaccatcacccccttttcatctcttctttcaatgtttttg 51038833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 158 - 219
Target Start/End: Complemental strand, 54849919 - 54849858
Alignment:
Q  158 ggtatttgagtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttg 219  Q
    ||||||| | |||||| |||||| ||||||| ||| | ||||||||||||||||| ||||||    
T  54849919 ggtattttaataatttcacatcacatcatcatcctctctcatctcttctttcaatatttttg 54849858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 114; Significance: 7e-58; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 98 - 271
Target Start/End: Complemental strand, 42162790 - 42162610
Alignment:
Q  98 ggaaaaagataggtagacaccctttttcatacactttttatgtacaccccg-tgtattaagggtatttgagtaattttacatcatatcatcacccttttt 196  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  42162790 ggaaaaagataggtagacactctttttcatacactttttatgtacacccccatgtattaggggtatttgagtaattttacatcatatcatcacccttttt 42162691  T
Q  197 catctcttctttcaatgtttttgccacgtatca------tgtgtaggtgtaaaagggtgtatgccacctaacgtggttcat 271  Q
    ||||||||||||||||||||||| ||||| |||      ||| | |||||||||||||||||| ||||||| |||||||||    
T  42162690 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtttgggtgtaaaagggtgtatgacacctaaggtggttcat 42162610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 106 - 271
Target Start/End: Complemental strand, 44081964 - 44081792
Alignment:
Q  106 ataggtagacaccctttttcatacactttttatgtacaccccg-tgtattaagggtatttgagtaattttacatcatatcatcaccctttttcatctctt 204  Q
    |||||||||||||||||||||||||||| |||||||||||||  ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||    
T  44081964 ataggtagacaccctttttcatacacttcttatgtacacccccatgtattaggggtatttgagtaattttacattatatcatcaccctttttcatctctt 44081865  T
Q  205 ctttcaatgtttttgccacgtatca------tgtgtaggtgtaaaagggtgtatgccacctaacgtggttcat 271  Q
    |||||||||||||| |||||| | |      ||||| ||||||||||||||||||||||||||  ||||||||    
T  44081864 ctttcaatgttttttccacgtgttacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcat 44081792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 98 - 271
Target Start/End: Complemental strand, 30432530 - 30432351
Alignment:
Q  98 ggaaaaagataggtagacaccctttttcatacactttttatgtacaccccgtgtattaagggtatttgagtaattttacatcatatcatcaccctttttc 197  Q
    |||||||||| | ||||||||||||||||||||| | ||||||||| ||| | ||||| |||||||| |||||||||||||||||||||||||| |||||    
T  30432530 ggaaaaagattgatagacaccctttttcatacacctcttatgtacatcccatatattatgggtattttagtaattttacatcatatcatcaccccttttc 30432431  T
Q  198 atctcttctttcaatgtttttgccacgtatca------tgtgtaggtgtaaaagggtgtatgccacctaacgtggttcat 271  Q
    |||||||||||||||||||||||||||| |||      ||||| ||| ||||||||||||||||| |||| |||||||||    
T  30432430 atctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtataaaagggtgtatgccatctaaggtggttcat 30432351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 98 - 271
Target Start/End: Complemental strand, 31318997 - 31318817
Alignment:
Q  98 ggaaaaagataggtagacaccctttttcatacactttttatgtacaccccg-tgtattaagggtatttgagtaattttacatcatatcatcacccttttt 196  Q
    ||||||||||||||||||| | |||||||||||||| |||| ||||||||  ||||||| | ||||||||||||||||||||||||||||||||||||||    
T  31318997 ggaaaaagataggtagacatcatttttcatacacttcttatatacacccccatgtattaggagtatttgagtaattttacatcatatcatcacccttttt 31318898  T
Q  197 catctcttctttcaatgtttttgccacgtatca------tgtgtaggtgtaaaagggtgtatgccacctaacgtggttcat 271  Q
    ||||||||||||||||||||||||||||| |||      ||||| | ||||||| | | |||||||||||| |||||||||    
T  31318897 catctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtggatgtaaaaagttatatgccacctaaggtggttcat 31318817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 98 - 268
Target Start/End: Complemental strand, 43186218 - 43186042
Alignment:
Q  98 ggaaaaagataggtagacaccctttttcatacactttttatgtacaccccgtgtattaagggtatttgagtaattttacatcatatcatcaccctttttc 197  Q
    ||||||||||||||||||| | |||||||||||||| ||||||||||||  ||||||| ||| ||||||||||||||| |||||||||||||| ||||||    
T  43186218 ggaaaaagataggtagacatcatttttcatacacttcttatgtacaccctatgtattaggggcatttgagtaattttatatcatatcatcaccttttttc 43186119  T
Q  198 atctcttctttcaatgtttttgccacgtatca------tgtgtaggtgtaaaagggtgtatgccacctaacgtggtt 268  Q
    |||| ||||||||||||||||||||| |||||      |||| ||||||||||| || |||||||||||| ||||||    
T  43186118 atcttttctttcaatgtttttgccacatatcacaaatgtgtgcaggtgtaaaagagtatatgccacctaaagtggtt 43186042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 98 - 271
Target Start/End: Complemental strand, 18184744 - 18184565
Alignment:
Q  98 ggaaaaagataggtagacaccctttttcatacactttttatgtacaccccgtgtattaagggtatttgagtaattttacatcatatcatcaccctttttc 197  Q
    ||||||||||||||||||| |||||||||||||| ||||||||||||| | ||| ||| |||||||| |||||||||| ||||||||||||||| |||||    
T  18184744 ggaaaaagataggtagacatcctttttcatacaccttttatgtacacctcatgtgttaggggtattttagtaattttatatcatatcatcaccccttttc 18184645  T
Q  198 atctcttctttcaatgtttttgccacgtatc------atgtgtaggtgtaaaagggtgtatgccacctaacgtggttcat 271  Q
    |||||||| |||||||||||  |||||| ||      |||||| | |||||||||||||||| ||| ||| |||||||||    
T  18184644 atctcttcattcaatgttttcaccacgtgtcacaaatatgtgtggatgtaaaagggtgtatgtcacttaaggtggttcat 18184565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 98 - 271
Target Start/End: Complemental strand, 10203856 - 10203676
Alignment:
Q  98 ggaaaaagataggtagacaccctttttcatacactttttatgtacaccc-cgtgtattaagggtatttgagtaattttacatcatatcatcacccttttt 196  Q
    |||||||||||||||||||||||||||||||||  | |||||||||||| | ||||||| || ||||| |||||||||| ||||||||| ||||||||||    
T  10203856 ggaaaaagataggtagacaccctttttcatacatctcttatgtacaccctcatgtattagggatattttagtaattttatatcatatcaccacccttttt 10203757  T
Q  197 catctcttctttcaatgtttttgccacgtatca------tgtgtaggtgtaaaagggtgtatgccacctaacgtggttcat 271  Q
    |||||||||||||||| |||||| ||||| |||      ||||| | ||||||||| |||||| ||||||| |||||||||    
T  10203756 catctcttctttcaatatttttgtcacgtgtcacaaatgtgtgtggatgtaaaaggatgtatgtcacctaaggtggttcat 10203676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 98 - 271
Target Start/End: Complemental strand, 12665537 - 12665356
Alignment:
Q  98 ggaaaaagataggtagacaccctttttcatacactttttatgtacaccc-cgtgtattaagggtatttgagtaattttacatcatatcatcaccct-ttt 195  Q
    ||||||||||||||||||| |||||||| ||||| | ||||||| |||| | ||| ||| |||||||| ||||||||||||||||||||||||||| |||    
T  12665537 ggaaaaagataggtagacatcctttttcgtacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatcatatcatcacccttttt 12665438  T
Q  196 tcatctcttctttcaatgtttttgccacgtatca------tgtgtaggtgtaaaagggtgtatgccacctaacgtggttcat 271  Q
    | |||||||||||||||||||||||||| | | |      |||||  ||||||||||||||||||||||||| |||||||||    
T  12665437 ttatctcttctttcaatgtttttgccacatgttacaaatgtgtgtgagtgtaaaagggtgtatgccacctaaggtggttcat 12665356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 98 - 271
Target Start/End: Complemental strand, 36189406 - 36189228
Alignment:
Q  98 ggaaaaagataggtagacaccctttttcatacactttttatgtacaccccgtgtattaagggtatttgagtaattttacatcatatcatcaccctttttc 197  Q
    ||||||||||||||||||||||||||||||||||   ||||||||||||  | | ||| |||||||| | |||||||| ||||||||||||| | |||||    
T  36189406 ggaaaaagataggtagacaccctttttcatacaccacttatgtacaccca-tatgttaggggtattttaataattttatatcatatcatcactccttttc 36189308  T
Q  198 atctcttctttcaatgtttttgccacgtatca------tgtgtaggtgtaaaagggtgtatgccacctaacgtggttcat 271  Q
    ||||||||||||||| |||||||||||| |||      | ||| ||||||||||||||||||||||||||  ||||||||    
T  36189307 atctcttctttcaatatttttgccacgtgtcacaaatgtatgtgggtgtaaaagggtgtatgccacctaagatggttcat 36189228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 98 - 268
Target Start/End: Complemental strand, 33726203 - 33726026
Alignment:
Q  98 ggaaaaagataggtagacaccctttttcatacactttttatgtacaccccgtgtattaagggtatttgagtaattttacatcatatcatca-cccttttt 196  Q
    ||||||||||||||||||||||||||| |||||| |   ||||||||  | ||| ||| |||||||| |||||||| |||||| ||| ||| ||  ||||    
T  33726203 ggaaaaagataggtagacacccttttttatacacctcccatgtacacttcatgtgttaggggtattttagtaatttcacatcacatcgtcatccactttt 33726104  T
Q  197 catctcttctttcaatgtttttgccacgtatca------tgtgtaggtgtaaaagggtgtatgccacctaacgtggtt 268  Q
    ||||||||||||||||||||||||||| | |||      | ||| ||||||||| |||||||||||||||| ||||||    
T  33726103 catctcttctttcaatgtttttgccacatgtcacaaatgtttgtgggtgtaaaaaggtgtatgccacctaaagtggtt 33726026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 13 - 67
Target Start/End: Original strand, 41067306 - 41067360
Alignment:
Q  13 tgaattgataaaagagaaaagaaatattaataaaaaatgtcatttgaagtggtat 67  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41067306 tgaattgataaaagagaaaagaaatattaataaaaaatgtcatttgaagtggtat 41067360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 80
Target Start/End: Original strand, 2464017 - 2464086
Alignment:
Q  12 atgaattgataaaagagaaaagaaatattaat-aaaaaatgtcatttgaagtggtatatgagtggtatgg 80  Q
    ||||||||||||||| ||| |||||||| ||| ||||||| ||||||| ||||||||| |||||||||||    
T  2464017 atgaattgataaaagggaagagaaatatgaataaaaaaatatcatttggagtggtatacgagtggtatgg 2464086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 157 - 261
Target Start/End: Original strand, 42668841 - 42668950
Alignment:
Q  157 gggtatttgagtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgccacgtatca------tgtgtaggtgtaaaagggtgt 250  Q
    |||||||  |||||||| |||||||| ||||||| | | |||| |||||||| |||||||||||||||| |||      ||||| ||||| |||| ||||    
T  42668841 gggtattgtagtaatttcacatcataccatcacc-tctctcatatcttcttttaatgtttttgccacgtgtcacaattgtgtgtgggtgtcaaagtgtgt 42668939  T
Q  251 atgccacctaa 261  Q
    |||||||||||    
T  42668940 atgccacctaa 42668950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 114; Significance: 7e-58; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 98 - 271
Target Start/End: Original strand, 34749897 - 34750077
Alignment:
Q  98 ggaaaaagataggtagacaccctttttcatacactttttatgtacaccccg-tgtattaagggtatttgagtaattttacatcatatcatcacccttttt 196  Q
    ||||||||||||  ||||| |||||||||||||||| |||||||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  34749897 ggaaaaagatagccagacatcctttttcatacacttcttatgtacacccctatgtattaggggtatttgagtaattttacatcatatcatcacccttttt 34749996  T
Q  197 catctcttctttcaatgtttttgccacgtatc------atgtgtaggtgtaaaagggtgtatgccacctaacgtggttcat 271  Q
    ||||||||||||||||||||||||||||| ||      |||||| |||||||||||||||||||||||||| |||||||||    
T  34749997 catctcttctttcaatgtttttgccacgtgtcacaaatatgtgtgggtgtaaaagggtgtatgccacctaaggtggttcat 34750077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 98 - 271
Target Start/End: Complemental strand, 44000181 - 44000001
Alignment:
Q  98 ggaaaaagataggtagacaccctttttcatacactttttatgtacaccc-cgtgtattaagggtatttgagtaattttacatcatatcatcacccttttt 196  Q
    |||||||||||||||||||| |||||||||||||||||||||||| ||| | |||||||  |||||||||||||||||||||||||||||||||||||||    
T  44000181 ggaaaaagataggtagacactctttttcatacactttttatgtacgccctcatgtattagaggtatttgagtaattttacatcatatcatcacccttttt 44000082  T
Q  197 catctcttctttcaatgtttttgccacgtatca------tgtgtaggtgtaaaagggtgtatgccacctaacgtggttcat 271  Q
    ||||||||||||||||||||||||||||| |||      ||||| ||||||||| |||||||| ||||||| |||||||||    
T  44000081 catctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgacacctaaggtggttcat 44000001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 100 - 271
Target Start/End: Complemental strand, 36749596 - 36749418
Alignment:
Q  100 aaaaagataggtagacaccctttttcatacactttttatgtacaccc-cgtgtattaagggtatttgagtaattttacatcatatcatcaccctttttca 198  Q
    |||||||||||||||||| |||||||||||||||||||||||||||| | |||||||  |||||||||||||||||||||||||||||||||||||||||    
T  36749596 aaaaagataggtagacactctttttcatacactttttatgtacaccctcatgtattagaggtatttgagtaattttacatcatatcatcaccctttttca 36749497  T
Q  199 tctcttctttcaatgtttttgccacgtatca------tgtgtaggtgtaaaagggtgtatgccacctaacgtggttcat 271  Q
    ||||||||||||||||||||||||||| |||      ||||| ||||||||| |||||||| || |||| |||||||||    
T  36749496 tctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgacatctaaggtggttcat 36749418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 98 - 268
Target Start/End: Original strand, 51339783 - 51339957
Alignment:
Q  98 ggaaaaagataggtagacaccctttttcatacactttttatgtacaccccgtgtattaagggtatttgagtaattttacatcatatcatcaccctttttc 197  Q
    |||||||||||||||||||||||||||||||||| | ||||||||||  | ||| |||  ||||||| ||||||||||||||||||||||||||||||||    
T  51339783 ggaaaaagataggtagacaccctttttcatacacctcttatgtacacatcatgtgttagaggtattttagtaattttacatcatatcatcaccctttttc 51339882  T
Q  198 atctcttctttcaatgtttttgccacgtatc----atgtgtaggtgtaaaagggtgtatgccacctaacgtggtt 268  Q
    |||||||||||||||||||||||||||| ||    |||||| ||||||||||| |||||||||||||| ||||||    
T  51339883 atctcttctttcaatgtttttgccacgtgtcacaaatgtgtgggtgtaaaaggatgtatgccacctaaggtggtt 51339957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 99 - 271
Target Start/End: Complemental strand, 22894870 - 22894692
Alignment:
Q  99 gaaaaagataggtagacaccctttttcatacactttttatgtacaccc-cgtgtattaagggtatttgagtaattttacatcatatcatcaccctttttc 197  Q
    ||||||||||| ||||||||||||| ||||||||| |||||||||||| | ||||||| |||||||||||||||| ||||||||||||||| ||||||||    
T  22894870 gaaaaagatagatagacaccctttt-catacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcctttttc 22894772  T
Q  198 atctcttctttcaatgtttttgccacgtatca------tgtgtaggtgtaaaagggtgtatgccacctaacgtggttcat 271  Q
    |||||||||||||||||||||||||||| |||      ||||| |||||||||||||||||||||||||| |||||||||    
T  22894771 atctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcat 22894692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 97 - 271
Target Start/End: Original strand, 36370336 - 36370517
Alignment:
Q  97 cggaaaaagataggtagacaccctttttcatacactttttatgtacaccc-cgtgtattaagggtatttgagtaattttacatcatatcatcaccctttt 195  Q
    |||||||||||||||||| || |||||||||||||||||||| ||||||| | ||||||| |||||||||||||||||||||||||||||||||||||||    
T  36370336 cggaaaaagataggtagatactctttttcatacactttttatatacaccctcatgtattaggggtatttgagtaattttacatcatatcatcaccctttt 36370435  T
Q  196 tcatctcttctttcaatgtttttgccacgtatca------tgtgtaggtgtaaaagggtgtatgccacctaacgtggttcat 271  Q
    |||||||||||||||||||||||| ||| | |||      ||||| ||||||||| |||||||| ||||||| |||||||||    
T  36370436 tcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtgggtgtaaaaaggtgtatgacacctaaggtggttcat 36370517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 98 - 225
Target Start/End: Complemental strand, 48200877 - 48200749
Alignment:
Q  98 ggaaaaagataggtagacaccctttttcatacactttttatgtacaccccg-tgtattaagggtatttgagtaattttacatcatatcatcacccttttt 196  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||| |||||||    
T  48200877 ggaaaaagataggtagacatcctttttcatacactttttatgtacacccccatgtattatgggtatttgagtaattttacatcatatcatcatccttttt 48200778  T
Q  197 catctcttctttcaatgtttttgccacgt 225  Q
    |||||||||||||||| ||||||||||||    
T  48200777 catctcttctttcaatatttttgccacgt 48200749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 98 - 223
Target Start/End: Original strand, 46111943 - 46112069
Alignment:
Q  98 ggaaaaagataggtagacaccctttttcatacactttttatgtaca-ccccgtgtattaagggtatttgagtaattttacatcatatcatcacccttttt 196  Q
    ||||||||||||||||||||| |||||||||||| |||||| |||| |||| ||||||| |||||||| |||||||||||||||||||||||||||||||    
T  46111943 ggaaaaagataggtagacaccatttttcatacaccttttatatacatccccatgtattaggggtattttagtaattttacatcatatcatcacccttttt 46112042  T
Q  197 catctcttctttcaatgtttttgccac 223  Q
    |||||||||||||||||||||||||||    
T  46112043 catctcttctttcaatgtttttgccac 46112069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 97 - 261
Target Start/End: Complemental strand, 21559754 - 21559583
Alignment:
Q  97 cggaaaaagataggtagacaccctttttcatacactttttatgtacaccccg-tgtattaagggtatttgagtaattttacatcatatcatcaccctttt 195  Q
    ||||||||||||| |||||||| |||||||||||| | |||||||||||||  ||| ||| |||||||| ||||||||||||||||||||| ||||||||    
T  21559754 cggaaaaagatagatagacaccatttttcatacacctcttatgtacacccccatgtgttaggggtattttagtaattttacatcatatcattaccctttt 21559655  T
Q  196 tcatctcttctttcaatgtttttgccacgtatca------tgtgtaggtgtaaaagggtgtatgccacctaa 261  Q
    ||||||||||||||||| |||||||||||| |||      ||||| ||||||||||||||||||||||||||    
T  21559654 tcatctcttctttcaatatttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaa 21559583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 98 - 271
Target Start/End: Original strand, 30735495 - 30735674
Alignment:
Q  98 ggaaaaagataggtagacaccctttttcatacactttttatgtacaccccgtgtattaagggta-tttgagtaattttacatcatatcatcacccttttt 196  Q
    ||||||||||||||||||||||||||||||||||   |||||||||| || ||| ||| ||||| ||| |||||||| ||||||||||||||||||||||    
T  30735495 ggaaaaagataggtagacaccctttttcatacaccacttatgtacactccatgtgttaggggtatttttagtaatttaacatcatatcatcacccttttt 30735594  T
Q  197 catctcttctttcaatgtttttgccacgtatca------tgtgtaggtgtaaaagggtgtatgccacctaacgtggttcat 271  Q
     || ||||||||||||||||||||||||| |||      ||||| ||||||||||||||||||||| |||| |||||||||    
T  30735595 -atatcttctttcaatgtttttgccacgtgtcacagatgtgtgtgggtgtaaaagggtgtatgccatctaaggtggttcat 30735674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 98 - 197
Target Start/End: Complemental strand, 29473000 - 29472901
Alignment:
Q  98 ggaaaaagataggtagacaccctttttcatacactttttatgtacaccccgtgtattaagggtatttgagtaattttacatcatatcatcaccctttttc 197  Q
    ||||||||||||||||||| ||||||||||||||   ||||| ||||||| ||| ||| |||||||| ||||||||||||||||||||||| || |||||    
T  29473000 ggaaaaagataggtagacatcctttttcatacaccacttatgcacaccccatgtgttaggggtattttagtaattttacatcatatcatcatcccttttc 29472901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 98 - 271
Target Start/End: Complemental strand, 38231484 - 38231305
Alignment:
Q  98 ggaaaaagataggtagacaccctttttc-atacactttttatgtacaccccgtgtattaagggtatttgagtaattttacatcatatcatcacccttttt 196  Q
    ||||||||||||||||||| |||||||  |||||| | ||||||||||||| ||| | | ||||| || ||| |||| |||| | || || ||| ||||     
T  38231484 ggaaaaagataggtagacatccttttttgatacacctcttatgtacaccccatgtgtcaggggtagtttagtcatttcacattacattattaccatttt- 38231386  T
Q  197 catctcttctttcaatgtttttgccacgtatca------tgtgtaggtgtaaaagggtgtatgccacctaacgtggttcat 271  Q
    ||| ||||||||||||||||||||||| | |||      ||||| |||||||||||||||||||||||||| |||||||||    
T  38231385 catatcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcat 38231305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 98 - 223
Target Start/End: Original strand, 39072278 - 39072398
Alignment:
Q  98 ggaaaaagataggtagacaccctttttcatacactttttatgtacaccccgtgtattaagggtatttgagtaattttacatcatatcatcaccctttttc 197  Q
    |||||||||||||||||||| |||||| |||||  ||| ||||||||||| ||| | |||||||||| ||||     |||||| |||||||||| |||||    
T  39072278 ggaaaaagataggtagacacacttttttatacatctttgatgtacaccccatgtgtcaagggtattttagta-----acatcacatcatcacccattttc 39072372  T
Q  198 atctcttctttcaatgtttttgccac 223  Q
    ||||||||||| ||||||| ||||||    
T  39072373 atctcttcttttaatgtttatgccac 39072398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 98 - 253
Target Start/End: Original strand, 39467101 - 39467262
Alignment:
Q  98 ggaaaaagataggtagacaccctttttcatacactttttatgtacaccccgtgtattaagggtatttgagtaattttacatcatatcatcaccctttttc 197  Q
    ||||||||||||||| ||||||||||| |||||| |   ||||||||| | ||| ||| || ||||| |||||||| | |||| ||| |||||| |||||    
T  39467101 ggaaaaagataggtacacacccttttttatacacctcccatgtacacctcatgtgttatggatattttagtaatttcatatcacatcctcaccccttttc 39467200  T
Q  198 atctcttctttcaatgtttttgccacgtatc------atgtgtaggtgtaaaagggtgtatg 253  Q
    ||||||||||||||| |||||| ||| | ||      |||||| ||||||||||||||||||    
T  39467201 atctcttctttcaatatttttggcacatgtcacaaatatgtgtgggtgtaaaagggtgtatg 39467262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 193 - 271
Target Start/End: Complemental strand, 29460756 - 29460672
Alignment:
Q  193 ttttcatctcttctttcaatgtttttgccacgtatca------tgtgtaggtgtaaaagggtgtatgccacctaacgtggttcat 271  Q
    ||||||||||||||||||||||||||||||| | |||      ||||| |||||||||||||||||||||||||| |||||||||    
T  29460756 ttttcatctcttctttcaatgtttttgccacatgtcacaaaagtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcat 29460672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 193 - 271
Target Start/End: Complemental strand, 29471608 - 29471524
Alignment:
Q  193 ttttcatctcttctttcaatgtttttgccacgtatca------tgtgtaggtgtaaaagggtgtatgccacctaacgtggttcat 271  Q
    ||||||||||||||||||||||||||||||| | |||      ||||| |||||||||||||||||||||||||| |||||||||    
T  29471608 ttttcatctcttctttcaatgtttttgccacatgtcacaaaagtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcat 29471524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 137 - 271
Target Start/End: Original strand, 20856193 - 20856330
Alignment:
Q  137 atgtacaccccgtgtattaagggtatttgagtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgccacgtatca----tgt 232  Q
    ||||||||||| ||| | | |||||||| |||||||||| |||| ||||||| ||||||| || |||| |||||||||||||||||| | |||    |||    
T  20856193 atgtacaccccatgtgtcaggggtattt-agtaattttatatcacatcatcatccttttt-atatctt-tttcaatgtttttgccacatgtcacaaatgt 20856289  T
Q  233 gta--ggtgtaaaagggtgtatgccacctaacgtggttcat 271  Q
    |||  |||||||||||||||||||||||||| |||||||||    
T  20856290 gtatgggtgtaaaagggtgtatgccacctaaagtggttcat 20856330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 98 - 261
Target Start/End: Complemental strand, 50966310 - 50966152
Alignment:
Q  98 ggaaaaagataggtagacaccctttttcatacactttttatgtacaccccgtgtattaagggtatttgagtaattttacatcatatcatcaccctttttc 197  Q
    |||||||||||||||||||  ||||||||||||| | ||||||||| |||       ||   ||||| ||||||||||||| |||||||   ||||||||    
T  50966310 ggaaaaagataggtagacattctttttcatacacctcttatgtacatccc------caa--atattttagtaattttacattatatcat---cctttttc 50966222  T
Q  198 atctcttctttcaatgtttttgccacgtatc----atgtg--taggtgtaaaagggtgtatgccacctaa 261  Q
    ||||||||||||||| |||||| ||||| ||    |||||  ||| ||||||||||||||||||||||||    
T  50966221 atctcttctttcaatatttttgtcacgtgtcacaaatgtgaatagatgtaaaagggtgtatgccacctaa 50966152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 98 - 261
Target Start/End: Complemental strand, 51069445 - 51069287
Alignment:
Q  98 ggaaaaagataggtagacaccctttttcatacactttttatgtacaccccgtgtattaagggtatttgagtaattttacatcatatcatcaccctttttc 197  Q
    |||||||||||||||||||  ||||||||||||| | ||||||||| |||       ||   ||||| ||||||||||||| |||||||   ||||||||    
T  51069445 ggaaaaagataggtagacattctttttcatacacctcttatgtacatccc------caa--atattttagtaattttacattatatcat---cctttttc 51069357  T
Q  198 atctcttctttcaatgtttttgccacgtatc----atgtg--taggtgtaaaagggtgtatgccacctaa 261  Q
    ||||||||||||||| |||||| ||||| ||    |||||  ||| ||||||||||||||||||||||||    
T  51069356 atctcttctttcaatatttttgtcacgtgtcacaaatgtgaatagatgtaaaagggtgtatgccacctaa 51069287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 157 - 261
Target Start/End: Complemental strand, 53638267 - 53638157
Alignment:
Q  157 gggtatttgagtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgccacgtatca------tgtgtaggtgtaaaagggtgt 250  Q
    |||||||| || |||||||||||| ||||||||||  | |||||||||||||| |||||||| |||| | |||      ||||| ||||| |||||||||    
T  53638267 gggtattttagcaattttacatcacatcatcaccccctctcatctcttctttccatgtttttaccacatgtcacgattgtgtgtgggtgttaaagggtgt 53638168  T
Q  251 atgccacctaa 261  Q
    |||||||||||    
T  53638167 atgccacctaa 53638157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 113; Significance: 3e-57; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 98 - 271
Target Start/End: Complemental strand, 33732760 - 33732581
Alignment:
Q  98 ggaaaaagataggtagacaccctttttcatacactttttatgtacaccccgtgtattaagggtatttgagtaattttacatcatatcatcaccctttttc 197  Q
    |||||||||||||||||||||||||||||||||| | ||||||||||||| | ||||| |||||||| |||||||||||||||||||| |||||||||||    
T  33732760 ggaaaaagataggtagacaccctttttcatacacctcttatgtacaccccatatattaggggtattttagtaattttacatcatatcaccaccctttttc 33732661  T
Q  198 atctcttctttcaatgtttttgccacgtatca------tgtgtaggtgtaaaagggtgtatgccacctaacgtggttcat 271  Q
    |||||||||||||||||||||||||| | |||      ||||| |||||||||||||||||||||||||| |||||||||    
T  33732660 atctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcat 33732581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 101 - 271
Target Start/End: Original strand, 3830900 - 3831074
Alignment:
Q  101 aaaagataggtagacaccctttttcatacactttttatgtacaccccgtgtattaagggtatttgagtaattttacatcatatcatcaccctttttcatc 200  Q
    ||||||||||||||||||||||||||||||| | ||||||||||||| ||| ||| |||||| | ||||||||||||||| || ||||||  ||||||||    
T  3830900 aaaagataggtagacaccctttttcatacacctcttatgtacaccccatgtgttaggggtatattagtaattttacatcagataatcaccacttttcatc 3830999  T
Q  201 tcttctttcaatgtttttgccacgtatc----atgtgtaggtgtaaaagggtgtatgccacctaacgtggttcat 271  Q
    ||||||||||||||||||||||||| ||    |||||| |||||||||||||||||| ||||||| |||||||||    
T  3831000 tcttctttcaatgtttttgccacgtgtcacaaatgtgtgggtgtaaaagggtgtatgtcacctaaggtggttcat 3831074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 98 - 271
Target Start/End: Complemental strand, 44958305 - 44958125
Alignment:
Q  98 ggaaaaagataggtagacaccctttttcatacactttttatgtacaccc-cgtgtattaagggtatttgagtaattttacatcatatcatcacccttttt 196  Q
    ||||||||||||||||||| |||||||||||||| | ||||||| |||| | ||| ||| |||||||| |||||||||||||||||||||||||||||||    
T  44958305 ggaaaaagataggtagacatcctttttcatacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatcatatcatcacccttttt 44958206  T
Q  197 catctcttctttcaatgtttttgccacgtatca------tgtgtaggtgtaaaagggtgtatgccacctaacgtggttcat 271  Q
     |||||||||||||||||||||||||| | |||      ||||| |||||||||||||||||||||||||| |||||||||    
T  44958205 tatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcat 44958125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 98 - 271
Target Start/End: Complemental strand, 16090012 - 16089834
Alignment:
Q  98 ggaaaaagataggtagacaccctttttcatacactttttatgtacaccccgtgtattaagggtatttgagtaattttacatcatatcatcaccctttttc 197  Q
    ||||||||||||||||||||| |||||||||||| | ||||||||||||| ||| ||| |||||||| |||||||||||||||||||| || |||||||     
T  16090012 ggaaaaagataggtagacaccttttttcatacacctcttatgtacaccccatgtgttaggggtattttagtaattttacatcatatcacca-cctttttt 16089914  T
Q  198 atctcttctttcaatgtttttgccacgtatca------tgtgtaggtgtaaaagggtgtatgccacctaacgtggttcat 271  Q
    |||||||||||||||||||||||||||| |||      ||||| |||||||||||||||||||||| ||| |||||||||    
T  16089913 atctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacttaaggtggttcat 16089834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 98 - 223
Target Start/End: Original strand, 37498862 - 37498990
Alignment:
Q  98 ggaaaaagataggtagacaccctttttcatacactttttatgtaca-ccccgtgtattaagggtatttgagtaattttacatcatatcatcacc--cttt 194  Q
    ||||||||||||||||||||||||||| |||||| | ||||||||| |||| ||| ||| |||||||| |||||||||||||||||||||||||  ||||    
T  37498862 ggaaaaagataggtagacacccttttttatacacctcttatgtacatccccatgtgttaggggtattttagtaattttacatcatatcatcaccctcttt 37498961  T
Q  195 ttcatctcttctttcaatgtttttgccac 223  Q
    |||||||||||||||||||||||||||||    
T  37498962 ttcatctcttctttcaatgtttttgccac 37498990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 120 - 268
Target Start/End: Complemental strand, 14573165 - 14573010
Alignment:
Q  120 tttttcatacactttttatgtacaccccg-tgtattaagggtatttgagtaattttacatcatatcatcaccctttttcatctcttctttcaatgttttt 218  Q
    |||| ||||||| | |||||||||||||  ||| ||| |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  14573165 ttttacatacacctcttatgtacacccccatgtgttaggggtattttagtaattttacatcatatcatcacccttttccatctcttctttcaatgttttt 14573066  T
Q  219 gccacgtatca------tgtgtaggtgtaaaagggtgtatgccacctaacgtggtt 268  Q
    || |||| |||      ||||| | |||||||||||| ||||||||||| ||||||    
T  14573065 gctacgtgtcacaaatgtgtgtggatgtaaaagggtggatgccacctaaggtggtt 14573010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 98 - 268
Target Start/End: Original strand, 37914236 - 37914412
Alignment:
Q  98 ggaaaaagataggtagacaccctttttc-atacactttttatgtacaccccgtgtattaagggtatttgagtaattttacatcatatcatcacccttttt 196  Q
    |||||||||||||||||||||||||||  |||||| | ||||||||||||| ||||  | |||||||| | | |||| |||||| || ||||||| ||||    
T  37914236 ggaaaaagataggtagacacccttttttgatacacctcttatgtacaccccatgtacca-gggtattttaatcatttcacatcacattatcacccctttt 37914334  T
Q  197 catctcttctttcaatgtttttgccacgtatca------tgtgtaggtgtaaaagggtgtatgccacctaacgtggtt 268  Q
     |||||||||||||||||||||||||| | |||      ||||| | |||||||||||||||||||||||| ||||||    
T  37914335 tatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtggatgtaaaagggtgtatgccacctaaggtggtt 37914412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 98 - 271
Target Start/End: Complemental strand, 36315753 - 36315573
Alignment:
Q  98 ggaaaaagataggtagacaccctttttc-atacactttttatgtacaccccgtgtattaagggtatttgagtaattttacatcatatcatcacccttttt 196  Q
    ||||||||||||||||||| |||||||  |||||| | ||||||||||| | ||| | | |||||||| | | |||| |||||| || ||||||  ||||    
T  36315753 ggaaaaagataggtagacatccttttttgatacacctcttatgtacacctcatgtgtcaggggtattttaatcatttcacatcacattatcacctctttt 36315654  T
Q  197 catctcttctttcaatgtttttgccacgtatca------tgtgtaggtgtaaaagggtgtatgccacctaacgtggttcat 271  Q
     |||||||||||||||||||||||||| | |||      ||||| |||||||||||||||||||||||||| |||||||||    
T  36315653 tatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcat 36315573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 5 - 80
Target Start/End: Complemental strand, 31811253 - 31811178
Alignment:
Q  5 gagagagatgaattgataaaagagaaaagaaatattaataaaaaatgtcatttgaagtggtatatgagtggtatgg 80  Q
    |||||| ||||||||||||||| |||||||||||| |||||||||||||||||| | |||||||||||||||||||    
T  31811253 gagagaaatgaattgataaaagggaaaagaaatataaataaaaaatgtcatttggattggtatatgagtggtatgg 31811178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 98 - 213
Target Start/End: Original strand, 6376238 - 6376353
Alignment:
Q  98 ggaaaaagataggtagacaccctttttcatacactttttatgtacaccccgtgtattaagggtatttgagtaattttacatcatatcatcaccctttttc 197  Q
    ||||||||||||||||||| ||||||| |||||| |   ||||||| | | ||| |||  ||||||| |||||||| |||||| ||| |||||| |||||    
T  6376238 ggaaaaagataggtagacatccttttttatacacctcccatgtacatctcatgtgttagaggtattttagtaatttcacatcacatcctcacccattttc 6376337  T
Q  198 atctcttctttcaatg 213  Q
    ||||||||||||||||    
T  6376338 atctcttctttcaatg 6376353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 157 - 219
Target Start/End: Original strand, 24137151 - 24137213
Alignment:
Q  157 gggtatttgagtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttg 219  Q
    |||||||| |||||||| |||||| ||| ||| || |||||||||||||||||||||||||||    
T  24137151 gggtattttagtaatttcacatcacatcctcatcccttttcatctcttctttcaatgtttttg 24137213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 98 - 223
Target Start/End: Complemental strand, 41188961 - 41188835
Alignment:
Q  98 ggaaaaagataggtagacaccctttt-tcatacactttttatgtacaccccgtgtattaagggtatttgagtaattttacatcatatcatcacccttttt 196  Q
    ||||||||||||| |||||||||||| | |||||| | | ||||||| | | ||| | |  | ||||| ||||||||||||||| ||||||| || ||||    
T  41188961 ggaaaaagataggcagacacccttttgttatacacctctcatgtacatcacatgtgtcagagatattttagtaattttacatcacatcatcatccctttt 41188862  T
Q  197 catctcttctttcaatgtttttgccac 223  Q
    ||| || | ||||||||||||||||||    
T  41188861 catatcatttttcaatgtttttgccac 41188835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 98 - 271
Target Start/End: Complemental strand, 6910 - 6730
Alignment:
Q  98 ggaaaaagataggtagacaccctttttcatacactttttatgtacaccc-cgtgtattaagggtatttgagtaattttacatcatatcatcacccttttt 196  Q
    ||||||||||||||||| ||| |||||||||||||| |||||||||||| | ||||||| || ||||| |||||||||||||||||||||||||||||||    
T  6910 ggaaaaagataggtagataccttttttcatacacttcttatgtacaccctcatgtattagggatatttaagtaattttacatcatatcatcacccttttt 6811  T
Q  197 catctcttctttcaatgtttttgccacgtatca------tgtgtaggtgtaaaagggtgtatgccacctaacgtggttcat 271  Q
    ||||||||||||||||||||||||||||| |||      ||||| |||||||||||||||||||||||||| |||||||||    
T  6810 catctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcat 6730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 109; Significance: 7e-55; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 98 - 271
Target Start/End: Original strand, 3986905 - 3987084
Alignment:
Q  98 ggaaaaagataggtagacaccctttttcatacactttttatgtacaccccgtgtattaagggtatttgagtaattttacatcatatcatcaccctttttc 197  Q
    ||||||||||||||||||| | ||||||||||| || ||||||| ||||| ||||||||||||||||||||||||||||||||||| |||| || |||||    
T  3986905 ggaaaaagataggtagacatcatttttcatacatttattatgtataccccatgtattaagggtatttgagtaattttacatcatattatcatcccttttc 3987004  T
Q  198 atctcttctttcaatgtttttgccacgtatca------tgtgtaggtgtaaaagggtgtatgccacctaacgtggttcat 271  Q
    |||||||||||||||||||||||||||| |||      ||||| |||||||||||||||||||||||||| |||||||||    
T  3987005 atctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcat 3987084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 98 - 271
Target Start/End: Original strand, 3118046 - 3118226
Alignment:
Q  98 ggaaaaagataggtagacaccctttttcatacactttttatgtacac-cccgtgtattaagggtatttgagtaattttacatcatatcatcacccttttt 196  Q
    ||||||||||||||||||| |||||||||||||  | |||||||||| ||| ||||||| |||||||| |||||||||||||||| ||| ||||||||||    
T  3118046 ggaaaaagataggtagacatcctttttcatacatctcttatgtacactcccatgtattaggggtattttagtaattttacatcatgtcaccacccttttt 3118145  T
Q  197 catctcttctttcaatgtttttgccacgtatca------tgtgtaggtgtaaaagggtgtatgccacctaacgtggttcat 271  Q
     |||| ||||||||||||||||||||||| |||      |||||  ||||||||||||||||||||||||| |||||||||    
T  3118146 tatctattctttcaatgtttttgccacgtgtcacaaatgtgtgtgagtgtaaaagggtgtatgccacctaaggtggttcat 3118226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 98 - 268
Target Start/End: Original strand, 15345659 - 15345833
Alignment:
Q  98 ggaaaaagataggtagacaccctttttcatacactttttatgtacaccccgtgtattaagggtatttgagtaattttacatcatatcatcaccctttttc 197  Q
    ||||||| ||||||||||| | |||||||||||||| ||||||||||||  ||||||| ||| ||||||||||||| | |||||||||||||| ||||||    
T  15345659 ggaaaaaaataggtagacatcttttttcatacacttcttatgtacaccctatgtattaggggcatttgagtaatttgatatcatatcatcaccttttttc 15345758  T
Q  198 atctcttctttcaatgtttttgccacgtatc----atgtgtaggtgtaaaagggtgtatgccacctaacgtggtt 268  Q
    |||| ||||||||||||||||||||||| ||    |||| | |||||||||| || |||||||||||| ||||||    
T  15345759 atcttttctttcaatgtttttgccacgtgtcacaaatgtatgggtgtaaaagagtatatgccacctaaggtggtt 15345833  T

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Target: chr6; HSP #4
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 99 - 268
Target Start/End: Complemental strand, 14023124 - 14022949
Alignment:
Q  99 gaaaaagataggtagacaccctttttcatacactttttatgtacaccccgtgtattaagggtatttgagtaattttacatcatatcatcaccctttttca 198  Q
    |||||||||||||||||||||||||| |||||| |   ||||||||| | ||| ||| |||||||| |||||||| |||||| ||| |||||| || |||    
T  14023124 gaaaaagataggtagacacccttttttatacacctcccatgtacacctcatgtgttaggggtattttagtaatttcacatcacatcgtcaccccttgtca 14023025  T
Q  199 tctcttctttcaatgtttttgccacgtatca------tgtgtaggtgtaaaagggtgtatgccacctaacgtggtt 268  Q
    ||||||||||||||||||||||||| | |||      ||||| |||||||||||||||||||||||||| ||||||    
T  14023024 tctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggtt 14022949  T

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Target: chr6; HSP #5
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 98 - 229
Target Start/End: Complemental strand, 13697759 - 13697628
Alignment:
Q  98 ggaaaaagataggtagacaccctttttcatacactttttatgtacaccccgtgtattaagggtatttgagtaattttacatcatatcatcaccctttttc 197  Q
    ||||||||||||||||| | | ||||||||||| |  ||||||||||||| ||| |||  | ||||| |||||||||| ||||||||||||||| |||||    
T  13697759 ggaaaaagataggtagagatcatttttcatacattacttatgtacaccccatgtgttagagatattttagtaattttatatcatatcatcacccgttttc 13697660  T
Q  198 atctcttctttcaatgtttttgccacgtatca 229  Q
    ||||||||||||||||||||| ||||||||||    
T  13697659 atctcttctttcaatgtttttaccacgtatca 13697628  T

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Target: chr6; HSP #6
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 98 - 229
Target Start/End: Complemental strand, 24208635 - 24208504
Alignment:
Q  98 ggaaaaagataggtagacaccctttttcatacactttttatgtacaccccgtgtattaagggtatttgagtaattttacatcatatcatcaccctttttc 197  Q
    ||||||||||||||||||| ||||||| |||||| | | || |||||| | ||| ||| |||||||| |||||||| |||||| ||| ||||||||||||    
T  24208635 ggaaaaagataggtagacatccttttttatacacctctcatttacacctcatgtgttaggggtattttagtaatttcacatcacatcctcaccctttttc 24208536  T
Q  198 atctcttctttcaatgtttttgccacgtatca 229  Q
    |||||||||||||||||||||||||| |||||    
T  24208535 atctcttctttcaatgtttttgccacatatca 24208504  T

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Target: chr1 (Bit Score: 99; Significance: 6e-49; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 98 - 268
Target Start/End: Original strand, 34307137 - 34307314
Alignment:
Q  98 ggaaaaagataggtagacaccctttttcatacactttttatgtacac-cccgtgtattaagggtatttgagtaattttacatcatatcatcacccttttt 196  Q
    ||||||||||||||||||||| |||||||||||| | |||||||||| ||| ||| ||| |||||||| |||||||||||||||||||||||||||||||    
T  34307137 ggaaaaagataggtagacaccttttttcatacacctcttatgtacactcccatgtgttaggggtattttagtaattttacatcatatcatcacccttttt 34307236  T
Q  197 catctcttctttcaatgtttttgccacgtatca------tgtgtaggtgtaaaagggtgtatgccacctaacgtggtt 268  Q
    ||| ||||||||||||||||||||||||| |||      ||||| | |||||||||||||||||||||||| ||||||    
T  34307237 catatcttctttcaatgtttttgccacgtgtcacaaatgtgtgtggatgtaaaagggtgtatgccacctaaggtggtt 34307314  T

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Target: chr1; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 98 - 271
Target Start/End: Original strand, 46901734 - 46901914
Alignment:
Q  98 ggaaaaagataggtagacaccctttttcatacactttttatgtacacc-ccgtgtattaagggtatttgagtaattttacatcatatcatcacccttttt 196  Q
    ||||||||||||||||||| ||||||||||||| || ||||||||||| || ||||| | | ||||||||||||||||||||||||||||||||||||||    
T  46901734 ggaaaaagataggtagacatcctttttcatacatttcttatgtacaccgccatgtatcaggagtatttgagtaattttacatcatatcatcacccttttt 46901833  T
Q  197 catctcttctttcaatgtttttgccacgtatc------atgtgtaggtgtaaaagggtgtatgccacctaacgtggttcat 271  Q
    |||||||||||| |||||||||||||||| ||      |||||| ||||||||| |||||||| ||||||| |||||||||    
T  46901834 catctcttcttttaatgtttttgccacgtgtcacaaatatgtgttggtgtaaaatggtgtatgtcacctaaggtggttcat 46901914  T

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Target: chr1; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 100 - 271
Target Start/End: Original strand, 39249864 - 39250042
Alignment:
Q  100 aaaaagataggtagacaccctttttcatacactttttatgtacaccccg-tgtattaagggtatttgagtaattttacatcatatcatcaccctttttca 198  Q
    ||||||||||||||||||| |||||||||||| | |||||||||||||  ||||||| |||||||| ||||||||||||| |||||| || |||||||||    
T  39249864 aaaaagataggtagacaccttttttcatacacctcttatgtacacccccatgtattaggggtattttagtaattttacattatatcaccatcctttttca 39249963  T
Q  199 tctcttctttcaatgtttttgccacgtatc----atgtgta--ggtgtaaaagggtgtatgccacctaacgtggttcat 271  Q
    ||||||||||||||||||||||||||| ||    |||||||  ||||||||||||||||||||||||||  ||||||||    
T  39249964 tctcttctttcaatgtttttgccacgtgtcacaaatgtgtatgggtgtaaaagggtgtatgccacctaagatggttcat 39250042  T

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Target: chr1; HSP #4
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 98 - 271
Target Start/End: Complemental strand, 2509216 - 2509036
Alignment:
Q  98 ggaaaaagataggtagacaccctttttcatacactttttatgtacaccc-cgtgtattaagggtatttgagtaattttacatcatatcatcacccttttt 196  Q
    ||||||||||||||||||||  |||||||||||| | |||||||||||| | ||||||| || ||||| |||||||||||||||||||| ||||||||||    
T  2509216 ggaaaaagataggtagacactttttttcatacacctcttatgtacaccctcatgtattagggatattttagtaattttacatcatatcaccacccttttt 2509117  T
Q  197 catctcttctttcaatgtttttgccacgtatca------tgtgtaggtgtaaaagggtgtatgccacctaacgtggttcat 271  Q
    ||||||||||||||||||||||||||||| |||      ||||| ||||||||||| |||||| ||||||| |||||||||    
T  2509116 catctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaaggatgtatgtcacctaaggtggttcat 2509036  T

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Target: chr1; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 100 - 223
Target Start/End: Original strand, 19258674 - 19258797
Alignment:
Q  100 aaaaagataggtagacaccctttttcatacactttttatgtacaccccgtgtattaagggtatttgagtaattttacatcatatcatcaccctttttcat 199  Q
    ||||||||||||||||||||||||| |||||  | | ||||||||||| ||| ||| |  ||||| | |||||| |||||| |||| ||||| |||||||    
T  19258674 aaaaagataggtagacacccttttttatacatctctcatgtacaccccatgtgttaggaatattttaataatttcacatcacatcaccaccccttttcat 19258773  T
Q  200 ctcttctttcaatgtttttgccac 223  Q
    ||||| ||||||||||||||||||    
T  19258774 ctcttttttcaatgtttttgccac 19258797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 98 - 222
Target Start/End: Complemental strand, 28647544 - 28647420
Alignment:
Q  98 ggaaaaagataggtagacaccctttttcatacactttttatgtacaccccgtgtattaagggtatttgagtaattttacatcatatcatcaccctttttc 197  Q
    ||||||||||||||||||||||||||| |||||  | | ||||||| ||| ||| ||| |  ||||| | |||||| |||||| |||| ||||| |||||    
T  28647544 ggaaaaagataggtagacacccttttttatacatctctcatgtacatcccatgtgttaggaatattttaataatttcacatcacatcaccaccccttttc 28647445  T
Q  198 atctcttctttcaatgtttttgcca 222  Q
    |||| ||||||||||||||||||||    
T  28647444 atctattctttcaatgtttttgcca 28647420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 219
Target Start/End: Original strand, 9642933 - 9642987
Alignment:
Q  166 agtaattttacatcatatcatca-ccctttttcatctcttctttcaatgtttttg 219  Q
    |||||||| |||||||||||||| ||| || ||||||||||||||| ||||||||    
T  9642933 agtaatttcacatcatatcatcacccccttctcatctcttctttcattgtttttg 9642987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 166 - 219
Target Start/End: Complemental strand, 29099939 - 29099886
Alignment:
Q  166 agtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttg 219  Q
    |||||||| |||||| |||||||||| |||| || |||| ||||||||||||||    
T  29099939 agtaatttcacatcacatcatcaccccttttaatttcttttttcaatgtttttg 29099886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 89; Significance: 6e-43; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 98 - 271
Target Start/End: Original strand, 87162 - 87342
Alignment:
Q  98 ggaaaaagataggtagacaccctttttcatacactttttatgtacaccccgtgtattaagggtatttgagtaattttacat--catatcatcaccctttt 195  Q
    ||||||||||||||||||||| |||||||||||| ||||||||||||||| ||| ||| |||||||| |||||||||| ||   ||||||||||  ||||    
T  87162 ggaaaaagataggtagacaccttttttcatacaccttttatgtacaccccatgtgttaggggtattttagtaattttatattatatatcatcactatttt 87261  T
Q  196 tcatctcttctttcaatgtttttgccacgtatc----atgtgt-aggtgtaaaagggtgtatgccacctaacgtggttcat 271  Q
    |||||||||||||||||||||||||||||| ||    ||||||  |||||| ||||||||||||||||||| |||||||||    
T  87262 tcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtggtgtacaagggtgtatgccacctaaggtggttcat 87342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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