View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3237_low_1 (Length: 935)
Name: NF3237_low_1
Description: NF3237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3237_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 790; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 790; E-Value: 0
Query Start/End: Original strand, 19 - 918
Target Start/End: Original strand, 5364271 - 5365174
Alignment:
| Q |
19 |
tgatatgtatgattcaaccatgaaaagtttacatcttgttatttgggttaactttttataatcatacttgtaggtgtcgttaatacgaggacactgtcat |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5364271 |
tgatatgtatgattcaaccatgaaaagtttacatcttgttatttgggttaactttttataatcatacttgtaggtgtcgttaatacgaggacactgtcat |
5364370 |
T |
|
| Q |
119 |
gtgtcggtcactttgacacacattaaaataatgattggtttgcaaaaactaatgaacatgttatttgcagagctagacataaggtggaaatgcactaaaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
5364371 |
gtgtcggtcactttgacacacattaaaataatgattggtttgcaaaaactaatgaacatgttatttgcagagctagacgtaaggtggaaatgcactaaaa |
5364470 |
T |
|
| Q |
219 |
agatgctacagtcattgtaaaattgattgaagtgtggtcaaaccgattttgggaagtacacgatcaaacttagtgcagatgttatctctagaactgagtt |
318 |
Q |
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|||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5364471 |
agatgctacagtcattataaaattggttgaagtgtggtcaaaccgattttgggaagtacacgatcaaacttagtgcagatgttatctctagaactgagtt |
5364570 |
T |
|
| Q |
319 |
ttgtacaagctaccaaaaggtaaagaaaatgttccatctcctcactgttctgctgagtcgttaagcagaggtgttgcagtgcgagtgtttctagcactcc |
418 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
5364571 |
ttgtataagctaccaaaaggtaaagaaaatgttccatctcctcactgttctgttgagtcgttgagcagaggtgttgcagtgcgagtgtttctagcactcc |
5364670 |
T |
|
| Q |
419 |
tctctaattataacaacaatatcttaattatcagttttagactcaaatcttttatcctaattttcagtttatcttttatgatttcaccctttcgattagt |
518 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5364671 |
tctctaattataacaacaatatcttaattatcaattttagactcaaatcttttatcctaattttcagtttatcttttatgatttcaccctttcgattagt |
5364770 |
T |
|
| Q |
519 |
tgctatatcaggatatcatcgatataatcaaatcctttattctattgtctagaagattgtttaaagccataaagagccttatatagattgcaaactaatt |
618 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
5364771 |
tgctatatcaggatatcattgatataatcaaatcctttattctattgtctagaagattgtttaaggccataaagagccttatatagattgcaaactaatt |
5364870 |
T |
|
| Q |
619 |
cctctttacctctaaattcaaaactcttaga----tatatcatatttgtttctttgagctcactatacaaaaatgaannnnnnnacatccatgtagtcca |
714 |
Q |
| |
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||||||||||||||||||||||| |||||| | |||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |
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| T |
5364871 |
gctctttacctctaaattcaaaacccttagattgtttcatcatatttgtttcttcgagctcactatacaaaaatgaatttttttacatccatgtagtcca |
5364970 |
T |
|
| Q |
715 |
actctaagtcaaattcagctaccatggcacacaaaattgtgactgctttgtgtttaacaatattatgagacaccattgaaaattgaaatcagttccctcc |
814 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |
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| T |
5364971 |
actctaagtcaaattcagctaccatggcacacaaaactgtgactgctttgtgtttaacaatattacgagacaccattgaaaattgaaatcaattccctcc |
5365070 |
T |
|
| Q |
815 |
ttttttaaagccttgagaaataagttgtgccttaaatcttccttgtcaaacttgctgaatgccttcctttttctcgaagatccattcacagctaaccagc |
914 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
5365071 |
ttttttaaagccttgagaaataagttgtgccttaaatcttccttgtccaacttgctgaatgccttcctttttctcgaagatccattcgcagctaaccagc |
5365170 |
T |
|
| Q |
915 |
cttg |
918 |
Q |
| |
|
|||| |
|
|
| T |
5365171 |
cttg |
5365174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 27 - 228
Target Start/End: Original strand, 5370259 - 5370458
Alignment:
| Q |
27 |
atgattcaaccatgaaaagtttacatcttgttatttgggttaactttttataatcatacttgtaggtgtcgttaatacgaggacactgtcatgtgtcggt |
126 |
Q |
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||||||||||||||||||| |||||||| |||||||| | ||||||| |||||| |||||| |||||||| ||||| ||||||| | ||||| | |
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| T |
5370259 |
atgattcaaccatgaaaagcttacatctagttatttgaagttactttttctaatcacacttgtcagtgtcgttcttacgaagacactgac--gtgtcagg |
5370356 |
T |
|
| Q |
127 |
cactttgacacacattaaaataatgattggtttgcaaaaacta-atgaacatgttatttgcagagctagacataaggtggaaatgcactaaaaagatgct |
225 |
Q |
| |
|
||||| ||||| |||||| ||| ||||||| | ||| | ||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||| |
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| T |
5370357 |
tactttcacacatcttaaaaatatggttggtttttagaaatttgatgaacatgttatttgccgagctagacataaggtgg-aatgcactaaagagatgct |
5370455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 300 - 421
Target Start/End: Original strand, 5375993 - 5376114
Alignment:
| Q |
300 |
ttatctctagaactgagttttgtacaagctaccaaaaggtaaagaaaatgttccatctcctcactgttctgctgagtcgttaagcag-aggtgttgcagt |
398 |
Q |
| |
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||||||||||| |||||||| || ||| ||||||||| | |||||||||||||||||||||||| ||| ||| || ||||| ||||| | ||| |||| |
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| T |
5375993 |
ttatctctagagctgagttt-gtgcaaactaccaaaaaggaaagaaaatgttccatctcctcacagttttgccgactcgttgagcagcatgtggtgcaaa |
5376091 |
T |
|
| Q |
399 |
gcgagtgtttctagcactcctct |
421 |
Q |
| |
|
| ||||||||||||||||||||| |
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|
| T |
5376092 |
gtgagtgtttctagcactcctct |
5376114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 2e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 284 - 369
Target Start/End: Original strand, 1267203 - 1267288
Alignment:
| Q |
284 |
aaacttagtgcagatgttatctctagaactgagttttgtacaagctaccaaaaggtaaagaaaatgttccatctcctcactgttct |
369 |
Q |
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||||||| ||||||| |||||||||||||||||||| || ||||||||||||||| || |||||| |||||||||||||| ||||| |
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| T |
1267203 |
aaacttactgcagatattatctctagaactgagtttggtgcaagctaccaaaagggaaggaaaatattccatctcctcacagttct |
1267288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 292 - 363
Target Start/End: Original strand, 6972421 - 6972492
Alignment:
| Q |
292 |
tgcagatgttatctctagaactgagttttgtacaagctaccaaaaggtaaagaaaatgttccatctcctcac |
363 |
Q |
| |
|
||||||| ||||||||| |||||||||| ||||||||||| |||||| |||| |||| || || |||||||| |
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| T |
6972421 |
tgcagatattatctctaaaactgagtttagtacaagctacaaaaagggaaagcaaatatttcacctcctcac |
6972492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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