View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3237_low_10 (Length: 606)

Name: NF3237_low_10
Description: NF3237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3237_low_10
NF3237_low_10
[»] chr2 (14 HSPs)
chr2 (370-501)||(27645040-27645166)
chr2 (146-308)||(27645227-27645389)
chr2 (146-218)||(27645499-27645572)
chr2 (16-69)||(27645499-27645552)
chr2 (146-214)||(27554426-27554495)
chr2 (146-213)||(27554734-27554802)
chr2 (455-501)||(27549588-27549634)
chr2 (16-65)||(27554446-27554495)
chr2 (16-62)||(27554300-27554346)
chr2 (146-214)||(27554582-27554651)
chr2 (16-65)||(27554602-27554651)
chr2 (16-71)||(27645314-27645369)
chr2 (80-123)||(27645419-27645461)
chr2 (16-64)||(27554754-27554802)


Alignment Details
Target: chr2 (Bit Score: 112; Significance: 3e-56; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 370 - 501
Target Start/End: Complemental strand, 27645166 - 27645040
Alignment:
Q  370 acccatcctaattttgttcatcaatttaggggtttaaaatcttctctgttaaggaagagaagagacaccgcgtggcccgttcctttttggtctataaata 469  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||    
T  27645166 acccatcctaattttgttcatcaatttaggggtttaaaatcttctctgttaaggaagaga-----caccgcgtggcccgttcctttttggtctataaata 27645072  T
Q  470 caaaccttcttcactccaaaatctcattaacc 501  Q
    ||||||||||||||||||||||||||||||||    
T  27645071 caaaccttcttcactccaaaatctcattaacc 27645040  T

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Target: chr2; HSP #2
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 146 - 308
Target Start/End: Complemental strand, 27645389 - 27645227
Alignment:
Q  146 cttttcctcctttgaacaaaatcatacgaaaggtattcataatgt-tatggtaatttttcatttaatgaaaatcnnnnnnnnnaaaggaatatcttaagg 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||         |||| ||||| ||||||    
T  27645389 cttttcctcctttgaacaaaatcatacgaaaggtattcataatgtatatggtaatttttcattcaataaaaatctttttttt-aaagaaatattttaagg 27645291  T
Q  245 ggtaagaattcacacgcaaaaaatatttttggaccaaattttggattaaccacagataaactga 308  Q
    ||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||    
T  27645290 ggtaagaattcacacgcaaaaaatatttttgaaccgaattttgaattaaccacagataaactga 27645227  T

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Target: chr2; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 146 - 218
Target Start/End: Complemental strand, 27645572 - 27645499
Alignment:
Q  146 cttttcctcctttgaacaaaatcatacgaaaggtattcataatgt-tatggtaatttttcatttaatgaaaatc 218  Q
    ||||||||||||||||||||||||||| ||||||||||  ||||| ||||||||||||||||||||||||||||    
T  27645572 cttttcctcctttgaacaaaatcatacaaaaggtattcgaaatgtatatggtaatttttcatttaatgaaaatc 27645499  T

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Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 27645552 - 27645499
Alignment:
Q  16 atcatacaaaaggtattcgaaatgtatatggtagtttttcatttaatgaaaatc 69  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  27645552 atcatacaaaaggtattcgaaatgtatatggtaatttttcatttaatgaaaatc 27645499  T

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Target: chr2; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 146 - 214
Target Start/End: Original strand, 27554426 - 27554495
Alignment:
Q  146 cttttcctcctttgaacaaaatcatacgaaaggtattcataatgt-tatggtaatttttcatttaatgaa 214  Q
    ||||||||||||||||||||||||||| ||||||||||  ||||| |||| |||||||||||||||||||    
T  27554426 cttttcctcctttgaacaaaatcatacaaaaggtattccaaatgtatatgttaatttttcatttaatgaa 27554495  T

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Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 146 - 213
Target Start/End: Original strand, 27554734 - 27554802
Alignment:
Q  146 cttttcctcctttgaacaaaatcatacgaaaggtattcataatgt-tatggtaatttttcatttaatga 213  Q
    ||||||||||||||||||||||||||| ||| |||||| |||||| |||| |||||||| |||||||||    
T  27554734 cttttcctcctttgaacaaaatcatacaaaaagtattcgtaatgtatatgataattttttatttaatga 27554802  T

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Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 455 - 501
Target Start/End: Complemental strand, 27549634 - 27549588
Alignment:
Q  455 tttggtctataaatacaaaccttcttcactccaaaatctcattaacc 501  Q
    ||||||||||||| ||||||||||||||| |||||||||||||||||    
T  27549634 tttggtctataaagacaaaccttcttcaccccaaaatctcattaacc 27549588  T

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Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 27554446 - 27554495
Alignment:
Q  16 atcatacaaaaggtattcgaaatgtatatggtagtttttcatttaatgaa 65  Q
    |||||||||||||||||| ||||||||||| || ||||||||||||||||    
T  27554446 atcatacaaaaggtattccaaatgtatatgttaatttttcatttaatgaa 27554495  T

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Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 62
Target Start/End: Original strand, 27554300 - 27554346
Alignment:
Q  16 atcatacaaaaggtattcgaaatgtatatggtagtttttcatttaat 62  Q
    ||||||||||||||||| ||||||||| ||||| |||||||||||||    
T  27554300 atcatacaaaaggtatttgaaatgtatttggtaatttttcatttaat 27554346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 146 - 214
Target Start/End: Original strand, 27554582 - 27554651
Alignment:
Q  146 cttttcctcctttgaacaaaatcatacgaaaggtattcataat-gttatggtaatttttcatttaatgaa 214  Q
    ||||||||||||| ||||||||||||| ||||||||||  |||   |||| |||||||||||||||||||    
T  27554582 cttttcctcctttaaacaaaatcatacaaaaggtattcgaaataaatatgataatttttcatttaatgaa 27554651  T

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Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 27554602 - 27554651
Alignment:
Q  16 atcatacaaaaggtattcgaaatgtatatggtagtttttcatttaatgaa 65  Q
    |||||||||||||||||||||||  ||||| || ||||||||||||||||    
T  27554602 atcatacaaaaggtattcgaaataaatatgataatttttcatttaatgaa 27554651  T

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Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 27645369 - 27645314
Alignment:
Q  16 atcatacaaaaggtattcgaaatgtatatggtagtttttcatttaatgaaaatctt 71  Q
    ||||||| ||||||||||  ||||||||||||| ||||||||| ||| ||||||||    
T  27645369 atcatacgaaaggtattcataatgtatatggtaatttttcattcaataaaaatctt 27645314  T

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Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 80 - 123
Target Start/End: Complemental strand, 27645461 - 27645419
Alignment:
Q  80 actatcattaaataaatatcttaaggagtaaagaattcacacac 123  Q
    |||||||||||||||||||||||| |||| ||||||||||||||    
T  27645461 actatcattaaataaatatcttaaagagt-aagaattcacacac 27645419  T

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Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 27554754 - 27554802
Alignment:
Q  16 atcatacaaaaggtattcgaaatgtatatggtagtttttcatttaatga 64  Q
    ||||||||||| ||||||| |||||||||| || ||||| |||||||||    
T  27554754 atcatacaaaaagtattcgtaatgtatatgataattttttatttaatga 27554802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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