View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3237_low_101 (Length: 268)
Name: NF3237_low_101
Description: NF3237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3237_low_101 |
 | |
|
| [»] chr2 (3 HSPs) |
| |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 13 - 268
Target Start/End: Complemental strand, 44555570 - 44555315
Alignment:
| Q |
13 |
aatatctgaatgataagaaaattggttgtaaacgtgcaatggtggaagaaaatggaattcaagtggatcaattgttttttcatgacccagatggattcat |
112 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
44555570 |
aatatctgaatgataagaaaattggctgtaaacgtgcaatggtggaagaaaatggaattcaagtggatcaattgttttttcatgacccagatggatttat |
44555471 |
T |
|
| Q |
113 |
gattgaaatatgcaattgtgatagtcttcctgttattcccttagctggtgaaatggttagatcatgctctagactcaaccttgagattatgccacaacag |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44555470 |
gattgaaatatgcaattgtgatagtcttcctgttattcccttagctggtgaaatggttagatcatgctctagactcaaccttgagattatgccacaacag |
44555371 |
T |
|
| Q |
213 |
atacatcaagttgtaaagcaaatttgatcatgatgaggccaagcttcttattttat |
268 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44555370 |
atacaccaagttgtaaagcaaatttgatcatgatgaggccaagcttcttattttat |
44555315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 13 - 268
Target Start/End: Complemental strand, 44544928 - 44544673
Alignment:
| Q |
13 |
aatatctgaatgataagaaaattggttgtaaacgtgcaatggtggaagaaaatggaattcaagtggatcaattgttttttcatgacccagatggattcat |
112 |
Q |
| |
|
|||||||||||||||| ||||||| |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
44544928 |
aatatctgaatgataaaaaaattgtttgtaagcgtgcattggtggaagaaaatggaattcaagtggatcaattgttttttcatgacccagatggatttat |
44544829 |
T |
|
| Q |
113 |
gattgaaatatgcaattgtgatagtcttcctgttattcccttagctggtgaaatggttagatcatgctctagactcaaccttgagattatgccacaacag |
212 |
Q |
| |
|
||||||||||||||||||||||||||| || |||||||| |||||||||| || |||| |||||||||||| |||||||||||| |||||||||| || |
|
|
| T |
44544828 |
gattgaaatatgcaattgtgatagtctcccagttattcctctagctggtgagattgttaattcatgctctagaatcaaccttgagactatgccacaaaag |
44544729 |
T |
|
| Q |
213 |
atacatcaagttgtaaagcaaatttgatcatgatgaggccaagcttcttattttat |
268 |
Q |
| |
|
||||| ||| |||| | |||||| | |||||||||||||| ||||||||||||| |
|
|
| T |
44544728 |
atacaccaacctgtagaaaaaatttaaacatgatgaggccaaacttcttattttat |
44544673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 65 - 130
Target Start/End: Original strand, 375982 - 376047
Alignment:
| Q |
65 |
tggaattcaagtggatcaattgttttttcatgacccagatggattcatgattgaaatatgcaattg |
130 |
Q |
| |
|
||||||| | || ||||||||||| |||||||| |||||||||| ||||||||||| |||||||| |
|
|
| T |
375982 |
tggaattaaggttgatcaattgttctttcatgatccagatggatatatgattgaaatgtgcaattg |
376047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 13 - 268
Target Start/End: Original strand, 51845919 - 51846178
Alignment:
| Q |
13 |
aatatctgaatgataagaaaattggttgtaaacgtgcaatggtggaagaaaatggaattcaagtggatcaattgttttttcatgacccagatggattcat |
112 |
Q |
| |
|
||||| |||| |||| ||||||||||| |||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
51845919 |
aatatttgaaggatatgaaaattggtttaaaacgtgcaatggttgaggaaaatggaattcaagtggatcagttgttttttcatgacccagatggattcat |
51846018 |
T |
|
| Q |
113 |
gattgaaatatgcaattgtgatagtcttcctgttattcccttagctggtgaaatggttagatcatgctctagactcaaccttgagattatgccacaacag |
212 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||||||||| |||||||||| ||||||| || |||| ||||||||||| ||||| ||||||||||||| |
|
|
| T |
51846019 |
gattgagatatgcaattgtgatagtctccctgttattcctttagctggtgggatggttacattatgccctagactcaactttgagtctatgccacaacag |
51846118 |
T |
|
| Q |
213 |
atacatcaagttgtaaagcaaatttgatcat----gatgaggccaagcttcttattttat |
268 |
Q |
| |
|
||| | ||||||| ||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
51846119 |
atagaccaagttgcaaagcaaatttgatcatgctcgatgaggccaagcttcttattttat |
51846178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 87 - 181
Target Start/End: Original strand, 2573272 - 2573366
Alignment:
| Q |
87 |
ttttttcatgacccagatggattcatgattgaaatatgcaattgtgatagtcttcctgttattcccttagctggtgaaatggttagatcatgctc |
181 |
Q |
| |
|
||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||| |||| ||||||| | | ||||||||||| |
|
|
| T |
2573272 |
tttttccatgacccagatggtttcatgattgagatatgcaattgtgatagtcttcctgtgattccattagttggtgaagtagcaagatcatgctc |
2573366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University