View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3237_low_103 (Length: 267)

Name: NF3237_low_103
Description: NF3237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3237_low_103
NF3237_low_103
[»] chr4 (9 HSPs)
chr4 (9-245)||(3691185-3691420)
chr4 (109-149)||(22492922-22492962)
chr4 (110-146)||(4400731-4400767)
chr4 (109-146)||(5409491-5409528)
chr4 (116-146)||(49069467-49069497)
chr4 (109-146)||(24016624-24016660)
chr4 (109-137)||(11891926-11891954)
chr4 (109-137)||(11892672-11892700)
chr4 (109-145)||(27982158-27982194)
[»] chr3 (10 HSPs)
chr3 (8-92)||(29715928-29716009)
chr3 (110-146)||(29715906-29715942)
chr3 (110-148)||(21382149-21382187)
chr3 (109-144)||(1553757-1553792)
chr3 (107-145)||(3116648-3116686)
chr3 (115-145)||(7754335-7754365)
chr3 (109-146)||(15769173-15769210)
chr3 (9-54)||(21382085-21382130)
chr3 (115-144)||(30226717-30226746)
chr3 (109-145)||(5271734-5271770)
[»] chr5 (4 HSPs)
chr5 (8-52)||(19321719-19321763)
chr5 (110-146)||(21317404-21317440)
chr5 (110-146)||(41472438-41472474)
chr5 (109-144)||(12190645-12190680)
[»] scaffold0007 (1 HSPs)
scaffold0007 (109-146)||(180945-180982)
[»] chr8 (6 HSPs)
chr8 (109-146)||(30804568-30804605)
chr8 (8-52)||(13415400-13415444)
chr8 (109-144)||(12358144-12358179)
chr8 (109-144)||(12359272-12359307)
chr8 (109-146)||(17702760-17702797)
chr8 (109-145)||(23265896-23265932)
[»] chr7 (6 HSPs)
chr7 (109-146)||(18113760-18113797)
chr7 (8-60)||(27388320-27388372)
chr7 (116-146)||(7416874-7416904)
chr7 (116-146)||(49014905-49014935)
chr7 (109-146)||(3393250-3393287)
chr7 (109-145)||(23311983-23312019)
[»] chr2 (4 HSPs)
chr2 (109-146)||(25933819-25933856)
chr2 (109-146)||(43214830-43214867)
chr2 (109-145)||(33737771-33737807)
chr2 (109-146)||(13289729-13289766)
[»] chr1 (3 HSPs)
chr1 (109-146)||(8829505-8829542)
chr1 (109-146)||(2222796-2222833)
chr1 (109-146)||(40776257-40776294)
[»] chr6 (1 HSPs)
chr6 (8-92)||(2423038-2423123)
[»] scaffold0240 (1 HSPs)
scaffold0240 (109-145)||(10864-10900)
[»] scaffold0006 (1 HSPs)
scaffold0006 (109-149)||(36600-36640)


Alignment Details
Target: chr4 (Bit Score: 146; Significance: 5e-77; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 9 - 245
Target Start/End: Original strand, 3691185 - 3691420
Alignment:
Q  9 caacaaaaagagacaaaacagataatgaacaacaacataaatataattataataacattgttgataatgaaagtgacaattagttcc-ttnnnnnnnnta 107  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||        ||    
T  3691185 caacaaaaagagacaaaacagataatgaacaacaacatatatataattataataacattgttgataatgaaagtgacaattagttcctttaaaaaaaata 3691284  T
Q  108 tgaaagtgacaattagtcaattacatatatgatatatcccaatnnnnnnncactatagtagttcattacacatatctaaaaaataatagaaacatcgtat 207  Q
    ||||||||||||||||||||||||||||||||||||| ||||        |||  ||||||||||||||||||||| |||||||||||||||||| ||||    
T  3691285 tgaaagtgacaattagtcaattacatatatgatatattccaaaaagaaaacac--tagtagttcattacacatatccaaaaaataatagaaacattgtat 3691382  T
Q  208 ccggcacatatcggttttccacggtctatccctcgcgt 245  Q
    ||| |||||||||||||||||| |||||||||||||||    
T  3691383 ccgacacatatcggttttccacagtctatccctcgcgt 3691420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 109 - 149
Target Start/End: Original strand, 22492922 - 22492962
Alignment:
Q  109 gaaagtgacaattagtcaattacatatatgatatatcccaa 149  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  22492922 gaaagtgacaattagtcaattacatatatgatatatcccaa 22492962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 110 - 146
Target Start/End: Complemental strand, 4400767 - 4400731
Alignment:
Q  110 aaagtgacaattagtcaattacatatatgatatatcc 146  Q
    |||||||||||||||||||||||||||||||||||||    
T  4400767 aaagtgacaattagtcaattacatatatgatatatcc 4400731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 109 - 146
Target Start/End: Complemental strand, 5409528 - 5409491
Alignment:
Q  109 gaaagtgacaattagtcaattacatatatgatatatcc 146  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  5409528 gaaagcgacaattagtcaattacatatatgatatatcc 5409491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 146
Target Start/End: Complemental strand, 49069497 - 49069467
Alignment:
Q  116 acaattagtcaattacatatatgatatatcc 146  Q
    |||||||||||||||||||||||||||||||    
T  49069497 acaattagtcaattacatatatgatatatcc 49069467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 109 - 146
Target Start/End: Original strand, 24016624 - 24016660
Alignment:
Q  109 gaaagtgacaattagtcaattacatatatgatatatcc 146  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  24016624 gaaagtgacaattagtcaattac-tatatgatatatcc 24016660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 137
Target Start/End: Complemental strand, 11891954 - 11891926
Alignment:
Q  109 gaaagtgacaattagtcaattacatatat 137  Q
    |||||||||||||||||||||||||||||    
T  11891954 gaaagtgacaattagtcaattacatatat 11891926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 137
Target Start/End: Complemental strand, 11892700 - 11892672
Alignment:
Q  109 gaaagtgacaattagtcaattacatatat 137  Q
    |||||||||||||||||||||||||||||    
T  11892700 gaaagtgacaattagtcaattacatatat 11892672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 145
Target Start/End: Complemental strand, 27982194 - 27982158
Alignment:
Q  109 gaaagtgacaattagtcaattacatatatgatatatc 145  Q
    ||||| || ||||||||||||||||||||||||||||    
T  27982194 gaaagcgataattagtcaattacatatatgatatatc 27982158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 8 - 92
Target Start/End: Complemental strand, 29716009 - 29715928
Alignment:
Q  8 acaacaaaaagagacaaaa-cagataatgaacaacaacataaatataattataataacattgttgataatgaaagtgacaattagt 92  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||    | |||||||| | ||||| |||||||||||||||    
T  29716009 acaacaaaaagagacaaaaacagataatgaacaacaacataaatataa----agtaacattgataataataaaagtgacaattagt 29715928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 110 - 146
Target Start/End: Complemental strand, 29715942 - 29715906
Alignment:
Q  110 aaagtgacaattagtcaattacatatatgatatatcc 146  Q
    |||||||||||||||||||||||||||||||||||||    
T  29715942 aaagtgacaattagtcaattacatatatgatatatcc 29715906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 110 - 148
Target Start/End: Original strand, 21382149 - 21382187
Alignment:
Q  110 aaagtgacaattagtcaattacatatatgatatatccca 148  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  21382149 aaagtgacaattagtcgattacatatatgatatatccca 21382187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 109 - 144
Target Start/End: Original strand, 1553757 - 1553792
Alignment:
Q  109 gaaagtgacaattagtcaattacatatatgatatat 144  Q
    ||||||||||| ||||||||||||||||||||||||    
T  1553757 gaaagtgacaactagtcaattacatatatgatatat 1553792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 145
Target Start/End: Complemental strand, 3116686 - 3116648
Alignment:
Q  107 atgaaagtgacaattagtcaattacatatatgatatatc 145  Q
    ||||||||||||||||||| | |||||||||||||||||    
T  3116686 atgaaagtgacaattagtcgaatacatatatgatatatc 3116648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 145
Target Start/End: Complemental strand, 7754365 - 7754335
Alignment:
Q  115 gacaattagtcaattacatatatgatatatc 145  Q
    |||||||||||||||||||||||||||||||    
T  7754365 gacaattagtcaattacatatatgatatatc 7754335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 109 - 146
Target Start/End: Complemental strand, 15769210 - 15769173
Alignment:
Q  109 gaaagtgacaattagtcaattacatatatgatatatcc 146  Q
    ||||| ||||||||||||||||||||||| ||||||||    
T  15769210 gaaagcgacaattagtcaattacatatatcatatatcc 15769173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 21382085 - 21382130
Alignment:
Q  9 caacaaaaagagacaaaacagataatgaacaacaacataaatataa 54  Q
    ||||||||||| |||||| ||||||||||||| ||||||| |||||    
T  21382085 caacaaaaagatacaaaatagataatgaacaaaaacataagtataa 21382130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 115 - 144
Target Start/End: Complemental strand, 30226746 - 30226717
Alignment:
Q  115 gacaattagtcaattacatatatgatatat 144  Q
    ||||||||||||||||||||||||||||||    
T  30226746 gacaattagtcaattacatatatgatatat 30226717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 145
Target Start/End: Complemental strand, 5271770 - 5271734
Alignment:
Q  109 gaaagtgacaattagtcaattacatatatgatatatc 145  Q
    ||||| ||||||||| |||||||||||||||||||||    
T  5271770 gaaagcgacaattagccaattacatatatgatatatc 5271734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 19321763 - 19321719
Alignment:
Q  8 acaacaaaaagagacaaaacagataatgaacaacaacataaatat 52  Q
    ||||||||||||||||||||| |||||||||||||||||||||||    
T  19321763 acaacaaaaagagacaaaacaaataatgaacaacaacataaatat 19321719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 146
Target Start/End: Complemental strand, 21317440 - 21317404
Alignment:
Q  110 aaagtgacaattagtcaattacatatatgatatatcc 146  Q
    |||||||||||||||||||||||||||| ||||||||    
T  21317440 aaagtgacaattagtcaattacatatattatatatcc 21317404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 146
Target Start/End: Original strand, 41472438 - 41472474
Alignment:
Q  110 aaagtgacaattagtcaattacatatatgatatatcc 146  Q
    |||| ||||||||||||||||||||||||||||||||    
T  41472438 aaagcgacaattagtcaattacatatatgatatatcc 41472474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 109 - 144
Target Start/End: Complemental strand, 12190680 - 12190645
Alignment:
Q  109 gaaagtgacaattagtcaattacatatatgatatat 144  Q
    ||||| ||||||||||||||||||||||||||||||    
T  12190680 gaaagcgacaattagtcaattacatatatgatatat 12190645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 109 - 146
Target Start/End: Original strand, 180945 - 180982
Alignment:
Q  109 gaaagtgacaattagtcaattacatatatgatatatcc 146  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  180945 gaaagcgacaattagtcaattacatatatgatatatcc 180982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 109 - 146
Target Start/End: Original strand, 30804568 - 30804605
Alignment:
Q  109 gaaagtgacaattagtcaattacatatatgatatatcc 146  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  30804568 gaaagcgacaattagtcaattacatatatgatatatcc 30804605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 13415444 - 13415400
Alignment:
Q  8 acaacaaaaagagacaaaacagataatgaacaacaacataaatat 52  Q
    |||| |||||||||||||||| ||||| |||||||||||||||||    
T  13415444 acaataaaaagagacaaaacatataattaacaacaacataaatat 13415400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 109 - 144
Target Start/End: Complemental strand, 12358179 - 12358144
Alignment:
Q  109 gaaagtgacaattagtcaattacatatatgatatat 144  Q
    ||||| ||||||||||||||||||||||||||||||    
T  12358179 gaaagcgacaattagtcaattacatatatgatatat 12358144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 109 - 144
Target Start/End: Complemental strand, 12359307 - 12359272
Alignment:
Q  109 gaaagtgacaattagtcaattacatatatgatatat 144  Q
    ||||| ||||||||||||||||||||||||||||||    
T  12359307 gaaagcgacaattagtcaattacatatatgatatat 12359272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 109 - 146
Target Start/End: Complemental strand, 17702797 - 17702760
Alignment:
Q  109 gaaagtgacaattagtcaattacatatatgatatatcc 146  Q
    |||| ||||| |||||||||||||||||||||||||||    
T  17702797 gaaaatgacatttagtcaattacatatatgatatatcc 17702760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 145
Target Start/End: Complemental strand, 23265932 - 23265896
Alignment:
Q  109 gaaagtgacaattagtcaattacatatatgatatatc 145  Q
    ||||| ||||||||||||| |||||||||||||||||    
T  23265932 gaaagcgacaattagtcaactacatatatgatatatc 23265896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 109 - 146
Target Start/End: Original strand, 18113760 - 18113797
Alignment:
Q  109 gaaagtgacaattagtcaattacatatatgatatatcc 146  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  18113760 gaaagcgacaattagtcaattacatatatgatatatcc 18113797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 27388372 - 27388320
Alignment:
Q  8 acaacaaaaagagacaaaacagataatgaacaacaacataaatataattataa 60  Q
    |||||||||||||| |||||| |||||||||||||||||| ||| || |||||    
T  27388372 acaacaaaaagagataaaacaaataatgaacaacaacatagatacaaatataa 27388320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 146
Target Start/End: Complemental strand, 7416904 - 7416874
Alignment:
Q  116 acaattagtcaattacatatatgatatatcc 146  Q
    |||||||||||||||||||||||||||||||    
T  7416904 acaattagtcaattacatatatgatatatcc 7416874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 146
Target Start/End: Original strand, 49014905 - 49014935
Alignment:
Q  116 acaattagtcaattacatatatgatatatcc 146  Q
    |||||||||||||||||||||||||||||||    
T  49014905 acaattagtcaattacatatatgatatatcc 49014935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 109 - 146
Target Start/End: Complemental strand, 3393287 - 3393250
Alignment:
Q  109 gaaagtgacaattagtcaattacatatatgatatatcc 146  Q
    ||||| ||||||||||||||||||||||| ||||||||    
T  3393287 gaaagcgacaattagtcaattacatatataatatatcc 3393250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 145
Target Start/End: Complemental strand, 23312019 - 23311983
Alignment:
Q  109 gaaagtgacaattagtcaattacatatatgatatatc 145  Q
    ||||| ||||||||||||| |||||||||||||||||    
T  23312019 gaaagcgacaattagtcaactacatatatgatatatc 23311983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 109 - 146
Target Start/End: Complemental strand, 25933856 - 25933819
Alignment:
Q  109 gaaagtgacaattagtcaattacatatatgatatatcc 146  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  25933856 gaaagcgacaattagtcaattacatatatgatatatcc 25933819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 109 - 146
Target Start/End: Complemental strand, 43214867 - 43214830
Alignment:
Q  109 gaaagtgacaattagtcaattacatatatgatatatcc 146  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  43214867 gaaagcgacaattagtcaattacatatatgatatatcc 43214830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 145
Target Start/End: Original strand, 33737771 - 33737807
Alignment:
Q  109 gaaagtgacaattagtcaattacatatatgatatatc 145  Q
    |||||| ||||||||||||||||||||||||||||||    
T  33737771 gaaagtaacaattagtcaattacatatatgatatatc 33737807  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 109 - 146
Target Start/End: Complemental strand, 13289766 - 13289729
Alignment:
Q  109 gaaagtgacaattagtcaattacatatatgatatatcc 146  Q
    ||||| |||||||||| |||||||||||||||||||||    
T  13289766 gaaagcgacaattagtaaattacatatatgatatatcc 13289729  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 109 - 146
Target Start/End: Original strand, 8829505 - 8829542
Alignment:
Q  109 gaaagtgacaattagtcaattacatatatgatatatcc 146  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  8829505 gaaagcgacaattagtcaattacatatatgatatatcc 8829542  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 109 - 146
Target Start/End: Original strand, 2222796 - 2222833
Alignment:
Q  109 gaaagtgacaattagtcaattacatatatgatatatcc 146  Q
    ||||| |||||||| |||||||||||||||||||||||    
T  2222796 gaaagcgacaattaatcaattacatatatgatatatcc 2222833  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 109 - 146
Target Start/End: Complemental strand, 40776294 - 40776257
Alignment:
Q  109 gaaagtgacaattagtcaattacatatatgatatatcc 146  Q
    ||||| || |||||||||||||||||||||||||||||    
T  40776294 gaaagcgaaaattagtcaattacatatatgatatatcc 40776257  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 92
Target Start/End: Complemental strand, 2423123 - 2423038
Alignment:
Q  8 acaacaaaaagagacaaaacagataatgaacaacaacataaatataattat-aataacattgttgataatgaaagtgacaattagt 92  Q
    |||| |||||||||||||| | | | || ||||||||||||||| || ||| ||||| |||| | |||| ||||||||||||||||    
T  2423123 acaataaaaagagacaaaagatacactggacaacaacataaataaaaatataaataatattgataataaagaaagtgacaattagt 2423038  T

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Target: scaffold0240 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 145
Target Start/End: Complemental strand, 10900 - 10864
Alignment:
Q  109 gaaagtgacaattagtcaattacatatatgatatatc 145  Q
    ||||| ||| |||||||||||||||||||||||||||    
T  10900 gaaagcgacgattagtcaattacatatatgatatatc 10864  T

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Target: scaffold0006 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 149
Target Start/End: Complemental strand, 36640 - 36600
Alignment:
Q  109 gaaagtgacaattagtcaattacatatatgatatatcccaa 149  Q
    |||||| | |||||||||||||||||||||||||| |||||    
T  36640 gaaagtaaaaattagtcaattacatatatgatataccccaa 36600  T

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