View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3237_low_105 (Length: 261)
Name: NF3237_low_105
Description: NF3237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3237_low_105 |
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Alignment Details
Target: chr6 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 53 - 251
Target Start/End: Original strand, 3186308 - 3186506
Alignment:
| Q |
53 |
caattgtgttgatggggtttatgattttggttacagggtacatgcagacaaacattgtttttgctaaagaaacctcagaaacctacaagtcaattgcttt |
152 |
Q |
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| T |
3186308 |
caattgtgttgatggggtttatgattttggttacagggtacatgcagacaaacattgttttttctaaagaaacctcataaacctacaagtcaattgcttt |
3186407 |
T |
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| Q |
153 |
ggggtaccctgtgtaacaggggtcgtgtttcaagttcatctcgaaaatcgttgagtttgagatgtcaagctcaagtaaatccaagagttgtggtctctg |
251 |
Q |
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| T |
3186408 |
ggggtaccctttgtaacaggggtcgtgtttcaagttcatctcgaaaatcgttgagtttgagatgtcaagctcaagtaaatccaagagttgtggtttctg |
3186506 |
T |
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Target: chr8 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 61 - 251
Target Start/End: Complemental strand, 42391841 - 42391651
Alignment:
| Q |
61 |
ttgatggggtttatgattttggttacagggtacatgcagacaaacattgtttttgctaaagaaacctcagaaacctacaagtcaattgctttggggtacc |
160 |
Q |
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| T |
42391841 |
ttgacggggtttatgattttgtttacagggtacatgcagacaaacattgtttttgctaaaaaaacctcagaaatctacaagtcaattgctttggggtacc |
42391742 |
T |
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| Q |
161 |
ctgtgtaacaggggtcgtgtttcaagttcatctcgaaaatcgttgagtttgagatgtcaagctcaagtaaatccaagagttgtggtctctg |
251 |
Q |
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| T |
42391741 |
ctttgtaacaggggtcgtgtttcaagttcatctcgaaaatcgttgagtttgagatgtcaagctcaagaaaatccaagagttgtggtttctg |
42391651 |
T |
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Target: chr3 (Bit Score: 99; Significance: 6e-49; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 53 - 251
Target Start/End: Complemental strand, 38411419 - 38411221
Alignment:
| Q |
53 |
caattgtgttgatggggtttatgattttggttacagggtacatgcagacaaacattgtttttgctaaagaaacctcagaaacctacaagtcaattgcttt |
152 |
Q |
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|||||||||| | ||||||| ||||||||||| |||||||||||||| ||||||||||||||| ||||||| ||||| |||| ||| |||||||||||| |
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| T |
38411419 |
caattgtgtttacggggtttgtgattttggtttcagggtacatgcaggcaaacattgtttttggtaaagaagcctcataaacagacacgtcaattgcttt |
38411320 |
T |
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| Q |
153 |
ggggtaccctgtgtaacaggggtcgtgtttcaagttcatctcgaaaatcgttgagtttgagatgtcaagctcaagtaaatccaagagttgtggtctctg |
251 |
Q |
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| T |
38411319 |
ggggtaccctttgtaataggggccgtgttctgagttcaactccaaaatcattgcgtttgagatgtcaagctcaacaaagtccaagagttgtggtttctg |
38411221 |
T |
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