View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3237_low_107 (Length: 257)
Name: NF3237_low_107
Description: NF3237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3237_low_107 |
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Alignment Details
Target: chr5 (Bit Score: 130; Significance: 2e-67; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 36956237 - 36956064
Alignment:
| Q |
1 |
caaaagagtatgatggtagcactaatggaacaaaagaatgatattgtgatgaagataatgaatgcttgaaacattgcatgacaaagattgtgtgcttttc |
100 |
Q |
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|||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||| | || |||||||||||||| |||||||||||||||| |
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| T |
36956237 |
caaaagagtatgatggtagcactaattgaactgaacaatgatattgtgatgaagataatgaaaacatggaacattgcatgacatagattgtgtgcttttc |
36956138 |
T |
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| Q |
101 |
cttctgattcacctggaacagcaaaacatgctgctactgatgctgtgattataagtgttgaaacaattgtgagg |
174 |
Q |
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|||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36956137 |
cttctgcttcacctggaacagctaaacatgctgctactgatgctgtgattataagtgttgaaacaattgtgagg |
36956064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 36935383 - 36935214
Alignment:
| Q |
1 |
caaaagagtatgatggtagcactaatggaacaaaagaatgatattgtgatgaagataatgaatgcttgaaacattgcatgacaaagattgtgtgcttttc |
100 |
Q |
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||||||||||||||||||||||||||||||| || ||||||| |||||||||||||||||| || |||||||||| |||||| |||||||||||||||| |
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| T |
36935383 |
caaaagagtatgatggtagcactaatggaactgaacaatgatactgtgatgaagataatgaaagcatgaaacattgtatgacatagattgtgtgcttttc |
36935284 |
T |
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| Q |
101 |
cttctgattcacctggaacagcaaaacatgctgctactgatgctgtgattataagtgttgaaacaattgt |
170 |
Q |
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|||||| ||||| |||||| || ||||||||||||||||| || |||||||||||||||||||||||||| |
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| T |
36935283 |
cttctgcttcacatggaacggctaaacatgctgctactgaagcagtgattataagtgttgaaacaattgt |
36935214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 36948161 - 36947998
Alignment:
| Q |
1 |
caaaagagtatgatggtagcactaatggaacaaaagaatgatattgtgatgaagataatgaatgcttgaaacattgcatgacaaagattgtgtgcttttc |
100 |
Q |
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|||||||||||||| ||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||||||| |
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| T |
36948161 |
caaaagagtatgataatagaactaatggaactgaataatgatattgtgatgaagataatgaatgcttgaaacattgcatgacataggttgtttgcttttc |
36948062 |
T |
|
| Q |
101 |
cttctgattcacctggaacagcaaaacatgctgctactgatgctgtgattataagtgttgaaac |
164 |
Q |
| |
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| T |
36948061 |
catctgcttcacctggaacagcaaaacatgctgctactgatgcagtgattataagggttgaaac |
36947998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 2 - 173
Target Start/End: Original strand, 37069799 - 37069970
Alignment:
| Q |
2 |
aaaagagtatgatggtagcactaatggaacaaaagaatgatattgtgatgaagataatgaatgcttgaaacattgcatgacaaagattgtgtgcttttcc |
101 |
Q |
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||||||||||||| |||| ||||||||||| || |||||||||||||||||||||||||| ||||| |||||||||||||| || |||| ||||||||| |
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| T |
37069799 |
aaaagagtatgatagtagaactaatggaactgaacaatgatattgtgatgaagataatgaaagcttggaacattgcatgacataggttgtttgcttttcc |
37069898 |
T |
|
| Q |
102 |
ttctgattcacctggaacagcaaaacatgctgctactgatgctgtgattataagtgttgaaacaattgtgag |
173 |
Q |
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|| | ||||||||||||||||||||||||||||||||| || |||||||||||||||||||| | |||||| |
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| T |
37069899 |
atccgcttcacctggaacagcaaaacatgctgctactgaagcagtgattataagtgttgaaaccaatgtgag |
37069970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 37079558 - 37079730
Alignment:
| Q |
1 |
caaaagagtatgatggtagcactaatggaacaaaagaatgatattgtgatgaagataatgaatgcttgaaacattgcatgacaaagattgtgtgcttttc |
100 |
Q |
| |
|
|||||||||||||| |||| ||||||||||| || ||||||||||||||||| |||||||| | || |||||||||||||| || |||| |||||||| |
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| T |
37079558 |
caaaagagtatgatagtagaactaatggaactgaacaatgatattgtgatgaatataatgaaaacatggaacattgcatgacataggttgtttgcttttc |
37079657 |
T |
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| Q |
101 |
cttctgattcacctggaacagcaaaacatgctgctactgatgctgtgattataagtgttgaaacaattgtgag |
173 |
Q |
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| || | ||||||||||||||||||||||||||||||||| || ||||||||||| |||||||| | |||||| |
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| T |
37079658 |
catccgcttcacctggaacagcaaaacatgctgctactgaagcagtgattataagggttgaaaccaatgtgag |
37079730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 114 - 164
Target Start/End: Complemental strand, 36971718 - 36971668
Alignment:
| Q |
114 |
tggaacagcaaaacatgctgctactgatgctgtgattataagtgttgaaac |
164 |
Q |
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||||||| |||||||||||||||||||||| |||||||||||||||||||| |
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| T |
36971718 |
tggaacaccaaaacatgctgctactgatgcagtgattataagtgttgaaac |
36971668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 12493587 - 12493756
Alignment:
| Q |
1 |
caaaagagtatgatggtagcactaatggaacaaaagaatgatattgtgatgaagataatgaatgcttgaaacattgcatgacaaagattgtgtgcttttc |
100 |
Q |
| |
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|||||||||||||| |||||||||||||||| || || ||||||||||||||||||||||| || || |||||||||||||| || |||||||||||| |
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| T |
12493587 |
caaaagagtatgatagtagcactaatggaactgaacaacgatattgtgatgaagataatgaaagcatggaacattgcatgacataggctgtgtgcttttc |
12493686 |
T |
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| Q |
101 |
cttctgattcacctggaacagcaaaacatgctgctactgatgctgtgattataagtgttgaaacaattgt |
170 |
Q |
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|||||| ||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||| |
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| T |
12493687 |
cttctgcttcacctggaacagctaaacatgctgctactgaagcagtgattataagtgttgaaacaattgt |
12493756 |
T |
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