View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3237_low_110 (Length: 255)
Name: NF3237_low_110
Description: NF3237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3237_low_110 |
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Alignment Details
Target: chr5 (Bit Score: 159; Significance: 9e-85; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 1153717 - 1153551
Alignment:
| Q |
1 |
caatttggttactttgagtgccaaagtctagtaatctgatgctttaatgtcatattagtgtaaaaataaatgttctgcaatttggttactttgagtgcca |
100 |
Q |
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| T |
1153717 |
caatttggttactttgagtgccaaagtctagtaatctgatgctttaatgtcatattagtgtaaaaataaatgttctgcaatttggttacttttagtgcca |
1153618 |
T |
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| Q |
101 |
gagtctagcaatctgatgctttaatgttagcttgtgcatgtatgtatctgtgcataaacaatatcaa |
167 |
Q |
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| T |
1153617 |
gagtctagcaatctgatgctttaatgttagcttgtgcatgtatgtatctgtgcataatcaatatcaa |
1153551 |
T |
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Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 65 - 127
Target Start/End: Complemental strand, 1153730 - 1153668
Alignment:
| Q |
65 |
aataaatgttctgcaatttggttactttgagtgccagagtctagcaatctgatgctttaatgt |
127 |
Q |
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| T |
1153730 |
aataaatgttttgcaatttggttactttgagtgccaaagtctagtaatctgatgctttaatgt |
1153668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 227
Target Start/End: Complemental strand, 1153758 - 1153699
Alignment:
| Q |
168 |
catattagtgtaaaaagattttggagtcagtaaatgttctgcaatctggttactttgagt |
227 |
Q |
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| T |
1153758 |
cataatagtgtaaaaagattctggagttaataaatgttttgcaatttggttactttgagt |
1153699 |
T |
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