View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3237_low_113 (Length: 254)
Name: NF3237_low_113
Description: NF3237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3237_low_113 |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 14 - 238
Target Start/End: Complemental strand, 2304146 - 2303922
Alignment:
| Q |
14 |
agacattggagatgacattgatggatccacaccagtaacaatttgaaaaaatatgaagtaattgaacataaccacatgtgtcagtatcgtgtcatacacc |
113 |
Q |
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| T |
2304146 |
agacattggagatgacattgatggatccacaccagtaacaatttgaaaaaatatgaagtaattgaacataaccacatgtgtcagtatcatgtcatacacc |
2304047 |
T |
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| Q |
114 |
aaacacatcttcaatctgaagtttcggtgctacatacatgtatgtttcgatgagtaatattgtagttatgattgtagattaccaaagcgttagacactac |
213 |
Q |
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| T |
2304046 |
aaacacatcttcaatctgaagtttctgtgctacatacatgtatgtttctatgagtaatattgtagttatgattgtagattaccaaagcgttagacactac |
2303947 |
T |
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| Q |
214 |
agctgatcaagccagaagaggaaaa |
238 |
Q |
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| T |
2303946 |
agctgatcaagccagaagaggaaaa |
2303922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 235
Target Start/End: Complemental strand, 2265444 - 2265372
Alignment:
| Q |
163 |
atgagtaatattgtagttatgattgtagattaccaaagcgttagacactacagctgatcaagccagaagagga |
235 |
Q |
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| T |
2265444 |
atgagtaatattttagttatggtggcagagtagtaaagctgtagacactacagctgctcaagcaagaagagga |
2265372 |
T |
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