View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3237_low_119 (Length: 250)
Name: NF3237_low_119
Description: NF3237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3237_low_119 |
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Alignment Details
Target: chr1 (Bit Score: 131; Significance: 5e-68; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 34 - 243
Target Start/End: Complemental strand, 41731496 - 41731290
Alignment:
| Q |
34 |
taaatcaatggtttatttaaattgtttaagaaaagtctttttagtctatgtaaatatacaannnnnnnnncttttcgtccctataatgaagtaannnnnn |
133 |
Q |
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| T |
41731496 |
taaatcaatggtttatttaaattgtttaaggaaagtctttttagtctatgtaaatatacaatttttt----ttttcgtccctataatgaagtattttttt |
41731401 |
T |
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| Q |
134 |
nactactcatgtccctatcatcacacagttttt-attgcatctccatactcacttagattagatatgccactggggcatctccatagcagggttcgtagc |
232 |
Q |
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|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
41731400 |
tactactcacgtccctatcatcacacagttttttattgcatctccatactcacttagattatatatgccactggggcatctccatagcagggttcgtagc |
41731301 |
T |
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| Q |
233 |
cattcatttca |
243 |
Q |
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||||||||||| |
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| T |
41731300 |
cattcatttca |
41731290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 41731572 - 41731499
Alignment:
| Q |
1 |
caaacacatactaagtaggggagattcaacccttaaatcaatggtttatttaaattgtttaagaaaagtctttt |
74 |
Q |
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||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||| |||||||||| |
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| T |
41731572 |
caaacacatactaagtaaggaagattcaacccctaaatcaatggtttatttaaattgtttaaggaaagtctttt |
41731499 |
T |
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