View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3237_low_12 (Length: 573)
Name: NF3237_low_12
Description: NF3237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3237_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 18 - 558
Target Start/End: Original strand, 25703738 - 25704275
Alignment:
| Q |
18 |
attattggtgtttctctctactaacatggttacaccttttgtgtttgtcattcaatgaaaaacgtaaacaaaactcaaaggtgcaaaggtttttcggaga |
117 |
Q |
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| T |
25703738 |
attattggtgtttctctctactaacatggttacaccttttgtgtttgtcattcaatgaaaaacgtaaacaaaactcaaaggtgcaaaggtttttcggaga |
25703837 |
T |
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| Q |
118 |
gaagataatattttgagggtnnnnnnnnnnnnnnnnnnnnnngttgaagagaatggaatgaaaaattaggagacaattttaggggatgtgtatatatata |
217 |
Q |
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| T |
25703838 |
gaaggtaatattttgagggtttgtgttgtgtg----------gttgaagagaatggaatgaaaaattaggagacaattttaggggatgtgtatatatata |
25703927 |
T |
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| Q |
218 |
gtgagaggtggaggaatgggagagttattacagaggacacgtggtggggggaccgtgaaccggttgaaccggtaaattgttgaaactgaaaatagaata- |
316 |
Q |
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| T |
25703928 |
gtgagaggtggaggaatggaagagttattagagaggacacgtggtggggggaccgtgaaccggttgaaccggtaa-ttgttgaaactgaaaatagaatag |
25704026 |
T |
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| Q |
317 |
---------tgaggcacgtaatgttttgagtagagtgcgtgnnnnnnngtattctcgaaagtgagaatgcgatttgtgaattgggattgttatgtttgac |
407 |
Q |
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| T |
25704027 |
aatagtatatgagtcacgtaatgttttgagtagagtgcgtgtttttttgtattctcgaaagtgagaatgcgatttgtgaattgggattgttatgtttgac |
25704126 |
T |
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| Q |
408 |
ttctatgaattttctatatacacaatggagttaaggaaaggaaagggttgtgtaatgtatttgaccttctataacatcgtcaaaattgcacttttcagct |
507 |
Q |
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| T |
25704127 |
ttctatgaattttctatataca--atgaagttaaggaaaggaaagggttgtgtaatgtatttgaccttctataacatcgtcaaaattgcacttttcagct |
25704224 |
T |
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| Q |
508 |
tattcataacgatgttaattaacgcgccttgtaacttattgtggtcctatg |
558 |
Q |
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| T |
25704225 |
tattcataacgatgttaattaacgcgccttgtaacttattgtggtcctatg |
25704275 |
T |
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