View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3237_low_123 (Length: 249)
Name: NF3237_low_123
Description: NF3237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3237_low_123 |
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Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 45969035 - 45968804
Alignment:
| Q |
1 |
caccgaagataattattacctggagttgcaaggtgtgaaggagaaagttcttgacaatctcatgttctcctttaagcaagaaagcaagagcagaagggac |
100 |
Q |
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| T |
45969035 |
caccgaagataattattacctggagttgcaaggtgtgaaggagaaagttcttgacaatctcatgttctcctttaagcaagaaagcaagagcagaagggac |
45968936 |
T |
|
| Q |
101 |
gaaatctcgaataaagacctgatcataattcaagggtgaccccgaatcatcatttgccgcaacagttccaacaggtgtatcacaatatgtaacaagcgct |
200 |
Q |
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| T |
45968935 |
gaaatctcgaataaagacctgatcataattcaagggtgaccccgaatcatcatttgccgcaacagttccaacaggtgtatcacaatatgtaacaagcgct |
45968836 |
T |
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| Q |
201 |
ttctgcaataacttccatgcatctttttccac |
232 |
Q |
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| T |
45968835 |
ttctgcaataacttccatgcatctttctccac |
45968804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 15 - 133
Target Start/End: Original strand, 37654875 - 37654993
Alignment:
| Q |
15 |
attacctggagttgcaaggtgtgaaggagaaagttcttgacaatctcatgttctcctttaagcaagaaagcaagagcagaagggacgaaatctcgaataa |
114 |
Q |
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| T |
37654875 |
attacctgcaattgcaaggtatgaagaagaaagtacttaacaatctcagtatcccctttaagcaaaaaagcaagagccgacggaacaaaatcccgaataa |
37654974 |
T |
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| Q |
115 |
agacctgatcataattcaa |
133 |
Q |
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| T |
37654975 |
acacttgatcataattcaa |
37654993 |
T |
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