View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3237_low_125 (Length: 246)
Name: NF3237_low_125
Description: NF3237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3237_low_125 |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 18 - 236
Target Start/End: Complemental strand, 23905619 - 23905401
Alignment:
| Q |
18 |
agatacgagttgattatgccggcaccaaacaagttgaagcatataaaatacgacctttccaaccttgaagcatccatttgctgtcttcatcaaatacaaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23905619 |
agatacgagttgattatgccggcaccaaacaagttgaagcatataaaatacgacctttccaaccttgaagcatccatttgctgtcttcatcaaatacaaa |
23905520 |
T |
|
| Q |
118 |
atctctatggtaccattgcctcaacttagtcctaaatttctccattaaatgtgagtccaatggaagcggcttgaaaccagctcttgtattcctaacctgc |
217 |
Q |
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||||||||||||||||||| | |||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||| ||||||||| |
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| T |
23905519 |
atctctatggtaccattgctttaacttagtcctaaatttctccattaattgcgagtccaatggaagttgcttgaaaccagctcttgtatttctaacctgc |
23905420 |
T |
|
| Q |
218 |
cattgtttatatgtctctg |
236 |
Q |
| |
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||||||||||||||||||| |
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| T |
23905419 |
cattgtttatatgtctctg |
23905401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 18 - 236
Target Start/End: Original strand, 23921365 - 23921583
Alignment:
| Q |
18 |
agatacgagttgattatgccggcaccaaacaagttgaagcatataaaatacgacctttccaaccttgaagcatccatttgctgtcttcatcaaatacaaa |
117 |
Q |
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|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
23921365 |
agatactagttgattatgccggcaccaaacaagttgaagcatataaaatacgacccttccaaccttgaagcatccaattgctgtcttcatcaaatacaaa |
23921464 |
T |
|
| Q |
118 |
atctctatggtaccattgcctcaacttagtcctaaatttctccattaaatgtgagtccaatggaagcggcttgaaaccagctcttgtattcctaacctgc |
217 |
Q |
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||||||||||||||||||||| || ||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
23921465 |
atctctatggtaccattgccttaatttagtcctaaatttctccattaattgcgagtccaatggaagttgcttgaaaccagctcttgtattcctaacctgc |
23921564 |
T |
|
| Q |
218 |
cattgtttatatgtctctg |
236 |
Q |
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||||||||||||||||||| |
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| T |
23921565 |
cattgtttatatgtctctg |
23921583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 24 - 236
Target Start/End: Original strand, 23911356 - 23911568
Alignment:
| Q |
24 |
gagttgattatgccggcaccaaacaagttgaagcatataaaatacgacctttccaaccttgaagcatccatttgctgtcttcatcaaatacaaaatctct |
123 |
Q |
| |
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|||||||||||||||||||| |||| ||||||||||||||||| || ||||||||||||||||||||||| | | ||||| ||||||| ||||||||| | |
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| T |
23911356 |
gagttgattatgccggcacccaacatgttgaagcatataaaatgcgtcctttccaaccttgaagcatccaatcgttgtctacatcaaaaacaaaatcttt |
23911455 |
T |
|
| Q |
124 |
atggtaccattgcctcaacttagtcctaaatttctccattaaatgtgagtccaatggaagcggcttgaaaccagctcttgtattcctaacctgccattgt |
223 |
Q |
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|||||| |||||| ||||| ||||||||||| |||||||| | || | |||||||||| |||||||||||||||||||||||||||||||||| ||| |
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| T |
23911456 |
atggtaacattgctgtaactttgtcctaaatttgtccattaattccgaattcaatggaagctgcttgaaaccagctcttgtattcctaacctgccactgt |
23911555 |
T |
|
| Q |
224 |
ttatatgtctctg |
236 |
Q |
| |
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||||||||||||| |
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|
| T |
23911556 |
ttatatgtctctg |
23911568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 30 - 134
Target Start/End: Complemental strand, 41598819 - 41598715
Alignment:
| Q |
30 |
attatgccggcaccaaacaagttgaagcatataaaatacgacctttccaaccttgaagcatccatttgctgtcttcatcaaatacaaaatctctatggta |
129 |
Q |
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||||||| |||||| ||| || |||||||| | ||| || ||||||||||||||||||||||| ||| | ||||||||||| ||||||||| ||||||| |
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| T |
41598819 |
attatgctggcacccaaccagccgaagcatacataattcggcctttccaaccttgaagcatccagttgttatcttcatcaaagacaaaatctttatggta |
41598720 |
T |
|
| Q |
130 |
ccatt |
134 |
Q |
| |
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||||| |
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|
| T |
41598719 |
ccatt |
41598715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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